NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000116

Scaffold Ga0272420_1000116


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000116 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115559
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (30.40%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F055319Metagenome138Y
F071806Metagenome121Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_1000116122F021216N/AMKSNAMRREHHELEKALRNHEHNNDDHSNDTFNEHTESISSCDIIKESDERERE
Ga0272420_100011658F102181N/AMREVMIIVHVHALYQTLLSCIQLIFVSLILRNVEKLLESRSDEGSDRVCREMNDEERLIVQDLCNDLRYYHKKLRIQFYID
Ga0272420_100011661F055319AGCAGMIEVRVKRLRLVNKMICIQISERDLAQKLNFSCRQQNFFIYTDDITVVDIHDTQSEEILV
Ga0272420_100011667F071806N/AMKLQSQIIVLDSVQLHLFSVISALLQILALMNLEIEEFNVEDVKSQLDQDTLNLDEDSADTLTQIL
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