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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000117 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 115510 |
| Total Scaffold Genes | 113 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (30.97%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F010214 | Metagenome | 306 | Y |
| F044227 | Metagenome | 154 | Y |
| F050043 | Metagenome | 145 | Y |
| F074203 | Metagenome | 119 | Y |
| F086376 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_1000117110 | F002432 | N/A | MXKSLCKXLRITASLFTVYHSEIDDQSKXVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFLITSMILFYFNKEFHSRMSFNSDMINYKTTHERLEARKADDIVIQMKELLNFDHQQLKKMKLIIEVQINKHRRNIIYEVNYXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKYLHSMFSSKLLQLYSEDFLSKQHLESLKSITIKDDEHXEINDIELQMLSRSNTVQSQMNRSR |
| Ga0272420_1000117113 | F074203 | N/A | MSSHSFTEECFEEFRNHFFQTSDADSTKLSSAVSFIHENDESFAEMIILFMFYEIXKTRSLALNEETDRLYELNKQQEDEIKELKTRLQAKEITSSNFTYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVNLFSNEXVKLSYIHSRLFNDAAEIIQARREHDYVNLYRIIDDLLKELAQLFNDLNKKVNFRKEYYNLI |
| Ga0272420_100011719 | F044227 | N/A | MMQLXMKSSNDEACIHALFELIASAIKNVTKCXLFKLLNNHYYHEEFQSSSEDDNENEALEAI |
| Ga0272420_100011723 | F010214 | N/A | MXCLSKLLMKVFVLFNYDTSFLLCSSLMIFYTMMFRFDSRFKDERRFLCTRDARDCNLHRAAFSYSMIVIHXAEKYVMKERCTXXEDKVXLYXVTLFFSXFDLCHVDVEXIVSINVQSQSFDVXLXLMKENAFXSFSXALDFSCE |
| Ga0272420_100011731 | F050043 | N/A | MIKIXSXLKKDEVEENEKLRRTERVINKSTIIIHSCLCFIVSTTSFTQKINNVYVLSTRHHCCHLHQLHITYTIYNVIYTHYNRRXIVIQSKVSLFLVFSQRFEDFYXELLEXINECTSSFIRINKDINYXDXEXTHLKEKTIVMMNXLIEVRSETKVKDXVKDQIXVSSETL |
| Ga0272420_10001178 | F086376 | N/A | MTRSTESESVSIAHYNFQNVRRESLLSQNXAASEKEKGTNAMSNTEEENTNALFFVYEMIKISINEELNAXITANEADDLVVFIKYICQQHDIEIETHNDMIQMLEDVNETNIMLKITQTRLQKENRDKNVIICYLEAASSRQDTSTSEDXFLKSIKLLDSSLFKDSTQNVNNXLSXM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |