NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000126

Scaffold Ga0272420_1000126


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000126 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112999
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (50.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F048685Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10001262F013598N/AMNFIIDLSDSSEYNAILTIICRLSKERHYISCITDDEGITVEKTAEMLIQ
Ga0272420_10001263F048685N/AMYQSDKQNIKIDALTRQADVVLRDSEDERVCYQRITILTSNRMKIADLEENISESIYKQILETNRIDENCTLLREAIARDETQYEGIKLKNCRTQNEILYHDSQL
Ga0272420_10001267F000597AGGMKDVLISSTTSRSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKTKSIREFDDHYAKKLITHAIYSNLTVQDHTVDTASMLITRLDQHQMILEKT
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