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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000138 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 108009 |
| Total Scaffold Genes | 136 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 77 (56.62%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F021216 | Metagenome | 219 | Y |
| F025887 | Metagenome | 199 | Y |
| F058565 | Metagenome | 134 | Y |
| F065269 | Metagenome | 127 | Y |
| F098339 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_1000138103 | F000597 | N/A | MKDVLISSMMSISNDSFASESLAIECVLSSNKISYSLKSLIDIEAADYSFINEVIAQIVCNQLQIKSLTLIKVKSIREFNDHYAKKLITYVIYSNLTV |
| Ga0272420_1000138104 | F021216 | N/A | MSQIKSEMKSNAMRKEHHELKKALRNRECSDDDHLNDTLNEHTESISSCDVIEESDERER |
| Ga0272420_1000138106 | F017941 | N/A | MKIADLKKNISASIYKQILEINEINENCMLLREAIARDETQYEDIKLKNC |
| Ga0272420_1000138107 | F013598 | N/A | MNFIIDLFDSSEYNAILTIICRLSKERHYISCITDDEDITVEKTAEMLIQ |
| Ga0272420_1000138108 | F098339 | N/A | MIEFVNNNILFLIIFLILFFMNKNFYSCMSFDSDIIEYESTCERLQTNQVKNIFEQMNKTLIFARKALIKTREQMMNQVNKHRKKINYKIKSRMFLNE |
| Ga0272420_1000138133 | F065269 | N/A | MTRSTELELESESVSIARYELQNARRESLLSQNQTASEEEDMNASSNTEEENMNALLFDHEMIKISISTELNA |
| Ga0272420_1000138135 | F025887 | GAG | MLISCFINMLDDSFDFKSFIVNVILNSLKKIFRFLALIDIEVTDMTFIDDSLISELCKRFDIQ |
| Ga0272420_100013897 | F058565 | N/A | MTMNCMNHSNADSKTIASDVDSLQENRDARLKHSRNDKENVANIIDLLIKISTLEKEKSKDHS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |