NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1000139

Scaffold Ga0272420_1000139


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000139 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107780
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (35.54%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F037509Metagenome167Y
F044226Metagenome154Y
F059497Metagenome133Y
F070712Metagenome122Y
F102180Metagenome101Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100013917F102180N/ALKRSTLIITHHEKLKELIARAKHLADVMIENQEYHEKIYKVYNDSQTFLKTVKVMISTKDQTRLQRVQIAHESIQS
Ga0272420_100013929F102181N/AMIIVHVHALYQTLLSCIQLIFVFLILKYVEKLLKFRSNEDNDKVYKEMNNKRRLIIQDLCNNLNYHHKRLRIQFYIN
Ga0272420_100013931F001951N/AMTMMKFKFIDSSKDEKERNKNIVETTVIKMMIFELKKLLVNAEMFLTLMNEMIMKMK
Ga0272420_100013934F021896N/AMKNNLESEDFLKSIECNLTFLKSDKKYIFSDETSERDSYSTIVINEFFIKVREI
Ga0272420_100013940F001951N/AMKLKFIDLSRNEKEKDEDTVETTVTKMMIFEFKELLVNAEMFLTLMNEMIMKMK
Ga0272420_100013941F037509N/AMILISILIQIHSTDNETSIKKFVYLMINDIERQNNIKRSIESTRTYNHVIARESIAQSVVSVQID
Ga0272420_100013942F070712GAGMSDIKEKKFLNKVRKQVIFAEKRDSLNLYKKIELTTFIDHSKSCDMILTSVKNIDLQAEICFICHKSDHTSKECSDRTSRVNALEDDEFDLSTLNSESDSDSKN
Ga0272420_100013943F059497GAGMFVENIDREIVYNTQCKLDVINVFSVDETIQNLENVKVKLSLKYQNFLDIFDRAQADKLSSHRSYDHKIELTSDATSSYC
Ga0272420_100013947F044226N/AMKFSENFNIFSVISMTSFYFNKSFHSRMSFDSDATDYETIRERLEARKADDIVI
Ga0272420_100013948F102181N/AMKEITIIIHVHALYQTLLSCIQSIFVLLILKYVKKFLESKSNEDNDKICRRMNDEKRLIVQDLCNNLSYHHKRLRIQLYIN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.