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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000146 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 106417 |
| Total Scaffold Genes | 114 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (23.68%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023763 | Metagenome | 208 | Y |
| F024448 | Metagenome | 205 | Y |
| F042102 | Metagenome | 158 | Y |
| F058565 | Metagenome | 134 | Y |
| F074202 | Metagenome | 119 | Y |
| F079402 | Metagenome | 115 | Y |
| F104136 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_1000146102 | F023763 | N/A | VIRDHLNRIDKVFKLXLSFLESANNDHEFFIVDLIVTLNLIMFFXKVSDXMKNLILIILRENVFKHIVQSIDFYHNLVIXIIMTKNNLESEDFLKSIECNLTFLKSDKEYIFSDEMSERSDYSTIVIDESSIEVREI |
| Ga0272420_1000146106 | F024448 | GAG | VTFIKDAMKNVLISSTMSMSNDSFASESLTIECILSSNEINYSLKSLIDIEAADYSFINEVIAQIVCDQLQIKFLTLIKAKSIREFNDHYAKKLITHVIYSNLTIQDHMMSIISILITQLDQHQMILEKTXINKIDLVINMQINSLRFLNFNSHLKLIILLSSNKTITKQKSLIFTYILKRSFTFVTS |
| Ga0272420_100014633 | F074202 | N/A | MKRVDCKMNCKMNCKTIYMSFLLMFFCILCSDNAFDLALLLNDDFFLKLVISKLRLRVETELNFKEKVILRCSFFTVKDDDLDSSFNLETAMNFIKFLXFTIFCNNXSSFFNLFLSVKYDVTXSKXADAENXAFKSEVVVDFAVLSNVDNVNSSKFKNLDCENVMKRSTSIESSFFSSDIVN |
| Ga0272420_100014635 | F042102 | N/A | MTRSSESASIARYELRNARRKSLLSQNRAASEEEDTNASSNTEEENTNALLFDHEMIKISISTELNAXISTHEANDIVVFIKYICQQHDIEIKIHNDMIQMLEDVNETNITLKITQTRLQKENRNKNVIIRHLEAASSQQDTSTSEDXSSKSIKLLNSSLFEDSTQNVNNXLFRIQNKLKTNKNHFSIEELKIAYIESRVSEAAIKHIASRMRDTSLNSFLEVKEVLSIKNKMYDDLNHYHTIQRQYLKLYQNKISFHEFXMKFQRLSAKLKYNNETLLDDFQHKISSDLQRVTINEQTMNLNEFVNICMQVNFQLTKLNAXLALKTSTTQVARFITDILTTITTAISASISAXKKLRISKIDYVRKKLFKKELCFKCKKSEHRAHDCLESAQMHEIAANLKNDLSSSK |
| Ga0272420_100014642 | F058565 | N/A | MNRSSADSKTIVSDVDSLQENRDARSKCSHNDEKNVANIINILIKISTLKKEKSKDHS |
| Ga0272420_100014651 | F104136 | N/A | MIFSIKLAQIFSESXSMNKLXIXMNLLTSACKSTFDXRNXMLDQLSRHQRLKSLALSLTSXXXSLLRSQLQSLHERNSEYXTLTLLERSCLKKNFASNARSQNIEHMTVLSQLRCMKLQRIXKMICLRQSSDXERHAHILLHQYARXLIXFQIIYCECHLK |
| Ga0272420_100014656 | F079402 | N/A | MRNKFKMNKNHFSIEEMKIAYVKSRVSETMIKHIALRMKDIIMNSFLEAEKILSIINKMYNVLQAYQDXTRLKL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |