Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000150 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000150 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	105575
Total Scaffold Genes	132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (22.73%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

105575

Total Scaffold Genes

132 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (22.73%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F024448	Metagenome	205	Y
F038009	Metagenome	166	Y
F048018	Metagenome	148	Y
F061399	Metagenome	131	Y
F076668	Metagenome	117	Y
F080690	Metagenome	114	Y
F094625	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100015010	F038009	N/A	MSSMIKTLNFQLNYVKLYKRLIELICLKNNRSFKKKRFLTLNFXXVFFLNDLKNITRSFLFQMRNKTEXDLFLVNELNINXLFMSKRKIILLLVSRXETELLFASELRIKLLLVSELKTELLLSSEXKTRLLLTSELKTELLLLNEXKTKLLFASELSAELLLVSNL
Ga0272420_100015014	F061399	N/A	MNITYKYVLIFIDHFIKMKHLVLITFMKVKEVINCFYVHVXKHHDLLEFFMSDQDTQFIFDVXKHMCKMLKINVKLLIMYHSEINDQIKKVNTVIKHYLQAFINYMQNDXIKXLSEIEFIINNASLSITLTSFFLINLNQNLCLNFKFSESLLENLTSQAQNKLINVKEFIKKMKKLTEHLRNKMLIAQIIYKFNVNLFHHSCFKYFIKDEVXLNACNLSIAHLTVKLNDHNVDFFKIKRVFKNNFLIIELNFSAFMKIQSIFHVILLNHITSDFLSNQRQKSXKLIIINNDERFXYVNSILNFKHNRCYNSFLLKYYIDXKDHFST
Ga0272420_100015021	F020121	GAG	MKKLTKHLRNEMLIAQIIYEFNVNLSCCSCFKYFVEDKVXLNACNLSIARLVVKLDDHNIDFFKIKHVFKNNSLIIELNFSTFMKIHSIFHVILLNHITSDFLSSQHQKSQELIVIKNDERFXYVNNILNFKHDKCYNSSLLKYYINXKDHFSTXKSFHLLYNCEQTLNKYYLINSVVEESHVLSCVISQYQCQEL
Ga0272420_100015023	F024448	AGG	MKDVLISSTMSRSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLINRLDQHQMILEKTXMNKIGLVIDMRIDFLRFSNFNSTSQKSIALFSSNKSITKRKSLTSTHILKRSFTFVTSQTSQNKKFIE
Ga0272420_100015029	F048018	GAG	MIQRCSLSELSTYFLSXKYRXFSCSSYLTKEILLXCCASLQSALIIXAANLSLISTCFYNVXVKISAESSSRFRMSXSSXDLTSSTSNSLIFKFMKTRICKSAEIIENRCNXTESRTMICDXSFMTLMLKMSRARFSTILRSKTXVFRIVXYXYXCQESNIFLSLKRSSEXCVRAFNLSSILSKX
Ga0272420_100015036	F001951	N/A	MLEMIKVLSXTMTMTKLRFINSSRDEKERDEDTVKTTVTEIIIFELKELLINAEMFLTLINETMMKTKQD
Ga0272420_100015038	F094625	N/A	MKLSYNLLIDDEHAVEQFTQSMIENSVEIFHAMHELQNQVRQYDVIISFSFIIFSSSIYIELNSQSLATIAQIIAQILNNQSSFVVHLFVNSVAVFIASRFKKLLNISEYERNKDXLNAXKQNLIQRMNMNDDHYFFHXVKIIYVESXLIIDKKTHNSMNQYRVNNLCIIFIFTDX
Ga0272420_10001504	F080690	N/A	MKLLHNLLIDDERAVEQFTQSMIENSVEIFCVMQELQNQVQQHDIIISSSFIILNSSIYIELNFQSLAIITQIITQILNNQSSFVVHFSANSVAVFIAFRFKKLLDIFEYKRNKDQLNAXEQSLIQRINVNDDHYLSYRVKIIYVESXFIIDKKTHNLISQYXINNFCIIFIFTDXXHKLHHYCNNFFETENAHLYFRETLKQNMNNFVDYYNLFYQKKECSLMKDFSLIDCLKHNVNYFTQVIIFFXXNLNETQLFIFHQXVQAFSDINEELQQLKHH
Ga0272420_100015046	F076668	N/A	MTCLLLTSSFLACASARKTSKSLMHSTDHYAIKETSVFKSTTTTKKIMHMSNALSTDILMLCNRKDATNQTLLRCAKFENIRRSQKISFSKXSSKDXLERLCMIMLEQTCYNMIFAFSTLSXVLFKKSLKTLCASLXKVSALLFCIITFVVEFSLTFCSMQTSTXQQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSIK
Ga0272420_10001506	F009580	AGTAG	MIFIQISKRDLAQKLNFFREQRDFFIYIDDITVINIHDMQSEKLLIXAFFSDFAXMLQLAVVAQLSLVADFLDLKNDQSLILNDDNDET
Ga0272420_100015067	F010214	N/A	MXCLSKLLMKVSVLFDYDTSSLLCSSLMIFYTTMFXFNSXFKDERCFLCIYDAHDCNICRAAFSYSMIVIHXAEKYVMKERCTXXEDKVXLYXVILFFFXFNLCHINVELIVSINVQSQSFDVXLXSMKENAFXLFSXALNFSHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000150

Overview

Ecosystem & Geography

Associated Families

Sequences