NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000162

Scaffold Ga0272420_1000162


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000162 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101328
Total Scaffold Genes120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (59.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F013598Metagenome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_1000162113F013598N/AMNFIIDLSDLSEYNAILMIICRLSKERHYISCITDDEDITVKKTAEMLIQ
Ga0272420_1000162115F000597N/AMKDVLISSTMSMSDDSFASESLIIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIREFNDHYAKKLIIHVIYSNLTVQDHTIDTAFMLIT
Ga0272420_1000162116F003820N/AMKLFSDLDYDDCILMNDLQNKINNRLQNALSICSEKFTSLSRLKKFLQDVNNKQRVNYQLRSERRTVIVKVTVVPDKRVIFEFAKSSIICYICKISSHLFKNCSQNKINILTSQAFFLRLHEIIISKNKENEKMSFKNSEAKN
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