NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000165

Scaffold Ga0272420_1000165


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000165 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100282
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021896Metagenome216Y
F038010Metagenome166N
F048019Metagenome148Y
F074204Metagenome119Y
F086377Metagenome110Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100016514F102179N/AMINEVEKMSVHNVSENISMCSAMHVRSMLLRIMTLTVRKTHLNKVHFLKDRISQFELTTSKSTDVETLIHRDCNVAEKQLNSVTETVDYKQLISHAIVRVLTIHEIIYNFSSKFIVELIKILQQEDEFAVELRADEMMSI
Ga0272420_100016516F048019N/AVNEHAFELFFTQVFAKALQDESTVYAFVMINIVKKLIIEHQVKAMNNMTSCITNAFKTQTLLIELKEYKNVFLIKSVDKLLLHEDHDHAIEITAKSSYKSLYNLSNTELATLRQYLNDVLAKE
Ga0272420_100016519F021896N/AMTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMNERDNYFTIVIDKSFIEVREI
Ga0272420_10001652F038010N/AMNNDHLMLSDNLESNKINVNLSVLIDINVIDYAFINDSFAQRHFLLCFSLSEICILQKFDDQSVIFNLITHYALVKLQVSSEKLEETLFYVIQLSQFSVVLDLL
Ga0272420_100016521F086377GAGLILDCDNVQILIVHAKAKFFFEFLDEKNRSNYLKVTDLNEIFAQILIQIMMKF
Ga0272420_100016524F074204N/AMIVFCILHQAQSKVLILTLIDSEVFAYVFMNKFFVQQHHLLLHQLTHSHRLQEFDDQVLLINDITHIVEITMILNKHIKKLFFYITELSQYFIIMNLL
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