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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000187 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 95593 |
| Total Scaffold Genes | 106 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (29.25%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F013598 | Metagenome | 269 | Y |
| F020121 | Metagenome | 225 | Y |
| F036036 | Metagenome | 170 | Y |
| F037509 | Metagenome | 167 | Y |
| F064254 | Metagenome | 128 | Y |
| F074204 | Metagenome | 119 | Y |
| F086377 | Metagenome | 110 | Y |
| F094625 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_10001871 | F013598 | N/A | MNFIIDLFDLSEYNVILTIICRLSKKRHYISCIIDDEDTVKKTAEMLIQ |
| Ga0272420_100018713 | F020121 | N/A | MKKLTEHLHNEMLIAQIIYEFNVNLFHRSCFRYFIEDEVXLNAHNLSIAHFAVKLDDCNVDFFKIKHVFKNNSLIIELNLLAFMKIHSIFYVILLNHIASDSLLNQHQKSXKLIIVKNNKRFXYVNSILNFKRDKHYNSSLLKYYIDXENYFSTXKLFHLLNNCEQMLNKYHLVNSVIEESYVLSCVMFQC |
| Ga0272420_100018716 | F020121 | N/A | MKKLTEHLCDEMLIAQIIYEFNVNLFHRSCFKYFVEDEVXLNAYNLNIAHLAVKLNNHNVDFFKIKHVFKNNSLIIELNLLTFMKIHSIFHVILLSHIASDLLSSQRQKLQELIIIENDERFXYINNILNFKHDRCYNSSLLKYYIDXCQRLS |
| Ga0272420_10001872 | F036036 | N/A | MLVSLIHHLFSCFDQSFMSEDQYLVHLFRYILDLINLQAFASAFILNDVRVEAHMRMKAFVHEEESQEDDXEQDVIVDKLDHE |
| Ga0272420_100018723 | F064254 | N/A | MQELYELVSFLLSLSFIXFFNDVTVXNXFSMSVKSIIQMIIVITLMISRSFLKFMMFSLHCIVFHSIFHLEHVNKMCLINIXSLLHLHIVIMISSTHLSCRNXLKSIFLMRSCVNSALXDFAXSLCRCKCXXIISDVKYXKXAALNLFLQTTLHVCLICFCMSVNYVIISVRXCLISDRNNSCASSIILSAASFSSTSACSVT |
| Ga0272420_100018731 | F001951 | N/A | MMKFRFIDSSRNEKERNKDTVEIIVTKVLIFELKKLLVNAKMFLTLMNETMMKMK |
| Ga0272420_100018733 | F094625 | N/A | MKSFQNLLIDDERAVEQFTQSMIENSVEIFRIMQELQNQVXQHNVITSSLFIILNSSIYIKLNSQSLAMIVQIFAQILNNQSFFIIHLSANFVAVFTASRFKKLLDIFEYERNKDQLNAXEQSLIQRMNMNDDHYLSHRVKIIYVESXLIIDKKTLNLMNQYQVNDFCIIFIFANXQHKLHHYCNNSFKTENAHLYLRETLK |
| Ga0272420_100018745 | F037509 | N/A | MILISIFIQIHSIDNETSIKKFVYLMIDDIERQNNIKKSIESTRTYDHVIARESIAQSVALVQID |
| Ga0272420_10001875 | F074204 | N/A | MIVFCILHQAQFKVLTFTLIDNEVFAYVFMNKFFAQQHHLFLHQLIHSCRLQEFDDQVALIDDITHVVEITMILNEHIKKLFFYVIELSQYLIIMSLS |
| Ga0272420_10001878 | F086377 | N/A | MIQRFXDQRQKILILDCDSVQISIVHTEAKFFFEFLNEENKDDHLRVTDLNKIFAQIFIQITTKF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |