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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000191 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 93906 |
| Total Scaffold Genes | 100 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (13.00%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F002432 | Metagenome | 559 | Y |
| F008169 | Metagenome | 337 | Y |
| F040408 | Metagenome | 161 | Y |
| F052973 | Metagenome | 141 | Y |
| F075494 | Metagenome | 118 | Y |
| F087978 | Metagenome | 109 | Y |
| F104135 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100019114 | F104135 | N/A | MIQMFAAHLSTLKHQLSLYSDEHKRTHLFIKLRSELHVIITNVQSISITQNALIDLVTXLKTNLRKEHVLLLKRSQDENLHNXDKVNKKTHSKRKKFHRSTKLNSSSKTSSYTSLCYSKNLFNIMCYMCNQKNHYFTDCKDEKIKNRSKEFDANQVFLNLMLHMNRFKISRKDKFLMKASNCQEKNKKFSS |
| Ga0272420_100019118 | F075494 | GAG | MFIHSISINKYSAEHVESKLQDEIHXXTXVINDVEKKFVHSVSEXRYSVKHVESRLQDEIYCTXVINKVEKTSVYNVSENMSTCSAVHVRSMLLRIMILTVREMHLNEVHFLKDKISQFKSTTSRSTDVKTLTHKDCNVVEKQLNSVAETVDCKQLISCAIVRVLIIHEMTYNFSSKFIVELIKILQQEDEFAVKLKADKMMNIXKSDVEA |
| Ga0272420_100019120 | F040408 | N/A | MYDYKLIFDIHIKNDAMKEEVSAAKERVEMLQDVQNTLMK |
| Ga0272420_100019127 | F087978 | N/A | MKQLHSIFSLKLLHSYFNNLLSEQHSESLRFLTIKNDEHXEINDILNFKCYQDXIQYKIKXTELNQDDEXYYVNKEEFNDFEDVLIEFYKFYSNKSR |
| Ga0272420_10001914 | F000597 | N/A | MSISNDSFASESLIIECVLSNNEISYSLKSLIDIEAVDYSFIDEVIAQIVYDQLQIESLTLIKAKSIXEFDDHYAKKLIIHVIYLNLTVQDHMIDIAFMLITQLN |
| Ga0272420_100019144 | F008169 | N/A | VNCSRIKSIDRFNDKESSLFARESIKSTNKFHLLCXRLNITLYVFLLQSSSIVIHSTLFQTNLIMSSHSSTEERFEEFRNRFFQISDADSLKSRTKSSSAASFIHEDDESFAEMIIFLVFYEIXKARSLALDEETDXLYELNKQQEDEIKELKTRLQAKKITSSDSIYSERSRSQKIPDSSLFTDEKNSIXKNXYKEIQNKLEINVDLFSNERVKLSYIHSRLFNDAAEIIQARRERDCVNLYRIVNDLLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLFFYLDYHKKQLIVDLKDKIHSYLRFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRVNDLSKTIFHRVTVVT |
| Ga0272420_10001916 | F001951 | N/A | MMIMMKFKFINSSRNEKEKDEDIVETTVTEMMIFEFKELLVNAEMLLTLMNEIMMKIK |
| Ga0272420_100019176 | F002432 | N/A | MKFSDNFNIFSITSMILFYFNKEFHSRMSFDSDTTDNKTTCKRLEARKANDIVIQMKELLNFDYQQLKKTKLIIEVQINKHRRDIIYEVNDXVXLSFRNVKTTRLCKDLKNKQLNLYQITVKMSIFYHLHLSVSMKHLHSMFSSKLLQSYSEDLLSEQHSESFRSITIKDDKHXKIDNILNFRRYQDXIQYKVKXTDLDRNDEXYCVDKEKFNDSEKVLNEFHKLYSNKSR |
| Ga0272420_100019177 | F052973 | N/A | MFRDCARLERNVFVTXEECDVDEQDVDERKECXERKKRLNHI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |