NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000198

Scaffold Ga0272420_1000198


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000198 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92347
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (23.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F074203Metagenome119Y
F079402Metagenome115Y
F096306Metagenome104Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100019851F096306N/AMYDNCAVDSLIIDDDSNEERSCRDNSELQASMILFDITILIATNVKIVFVESNDK
Ga0272420_100019862F104136N/AMIFSIRLAQIFSKSXSMNELXIXMNSSTSACKSTFDXQNXMLDQLSRHQLLKSLALLLASXQXSLLQSLLQSLHERNSEYRTLILLERSCLRKNSASNARSQNIEHVTVSSQLRCTKSQRIRKTICFRQSNDXERHAHILLHQYAQXLVXFQVVYCXHHLE
Ga0272420_100019863F079402N/AMQNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIALRMKNTITNSFLKAEEILSIINKMYNDLNRCHMTQRQFLKLY
Ga0272420_100019864F009377N/AMTRSTELESESVSIAHYELRNARKESLLSQNXTASEEENTNTLLFDHKMIKISISTELNAXISTHETDDLVVFIKYMYQQHDIKIKIHNDMIQMLNDVNKINIKLKAINIELKATQTTLNAVQTRLQKEMKKKNVIIHHLEATSSRLSTLILKDRFSKSIKLSDSSLFEDLRQNVNNXLF
Ga0272420_100019871F074203N/AMFSHLSTEEHFEEFRNRFSQISDADSLKSRTKSSSAASFIHEDDESFAETIILFVFYKTXKAQSLVLDEETDXLYELDKQQEDEIKELKTRLQAKEITSSDFIYSERSRSKKISDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNEXVKLSYIHSRLFNDAAEITQARREHDCVNLYKIIDDLLKELAQLFDDSNKKVNFRRKYYNLVQEFKKFNEFYTQFQRLSFYLDYHKK
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