Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000199 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000199 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	91630
Total Scaffold Genes	106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (20.75%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

91630

Total Scaffold Genes

106 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (20.75%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F019260	Metagenome	230	Y
F028667	Metagenome	190	Y
F044226	Metagenome	154	Y
F044227	Metagenome	154	Y
F057011	Metagenome	136	Y
F057012	Metagenome	136	Y
F070712	Metagenome	122	Y
F098340	Metagenome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_10001992	F044226	N/A	MMKFSDNFNIFLITLMIFFYFNKEFHSRMSFDSDMTDYKTTHERLEARKADDIVI
Ga0272420_100019939	F005901	AGAAG	MNDKLIVNVDQFNDEIICIVYMMSRLEDDAAKHIFAXRHFDSLNLFTSIYELFDHLKEIYNELNKNQKSQPEYNALKQADKFFNVFYFNFMKLFSYLNYDDCTLMNNLQNKINNRLQNALSICSKNFTSLFHLKKFLQDVNNKQRVNYQLRSERCIVIVKVTVISDKRATFLSMITLIINYVKSTIFSISESARSSIICYICKTLNHLFKNCSQLNKINISASXAFILRLHEIIILKNK
Ga0272420_100019955	F098340	AGAAG	MIEVTVYXTLVKNKKIKIFSLIINKINKALSSVEDFTELNEMISIMSLNELKKKLSIVYHDFLNIFNRKKTIHLSSHQSYNYKIKIRKXE
Ga0272420_100019956	F057012	N/A	MSDDSFNFKSFTIDIILSSLKKIFRFLVLNLINIKVIDMTFIDKSLMSELYERFDIQSILLSKSKLIXLYDETFDXKLIIYTLYTLIMIQEYKNEMISLLITCLNQHKIIIENLXLKRNQILIDFTNDXLILLLKIQTLKSVVLKVSSQSAFYKSESSEICKMKXKNLNLIVTSMIILKRLMNQKSVNKFIKSALIAKQST
Ga0272420_10001996	F070712	GAG	MNDIKEKKFMIKIRKQVIFAEKXDSLNSYKKIKVILSVDSSKSRDATLTNVKETDIQTESCFICHKSDHFFRECSDQTSRINALKDDKFDXFTLNSESDSDSKN
Ga0272420_100019960	F044227	N/A	MMQLQTKLSDSKACIHALLELNASAIKNAMXYXLFELSNNHHDHERFQNSSKNDDENKASKTI
Ga0272420_100019961	F028667	N/A	MIRDNKSVESRTACLLKSTANRRVFLISFNASTRSQNVAISXNINTSQQLCQRAINQSDEIIKMLIELRDQXNMTLKLNEQXIDLQVNHIKRLDELEINQTTINTQEETIIELRKKVLSLKKRQLSANQSXSQQSTKSXASIENHTXRKSFTLFNNDHHKFFKFSNSSIFTDEDESTXDSXRIKIDDKLQTNVNHFDNENICIVYVISRLEDDAAEHIFAQHQHDASHSYILINELFEHLKEIYNELNKNRKCCCKYNVLRQADKSFNVFYFNFMKLFSYLEYDNCTLMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIVKVTVVSDKCATTFLSAVMTSIIDYVKSIIFSISESDQAKSSIICYICKTSRHLFKNCSQLNKIDTSASHAFTLRLHKIIISKNKENEKISFENSEAKN
Ga0272420_10001997	F057011	N/A	LCSQIEVLLKENYFEKLFLINASLISQSNSFSLRSLINSDFVVYMLIHDKLVNKVCQKLEIQFISLAKEKLIREYDEKLARKIITHKILFNLMIESHKKLTMLMLIADIKHHEAILSKFXMKENEILLNIRHDTIVFFDQLNISISIFSISSNTKHSSXSXSTFISSAAHSKIFKMLKHSVSFIQKESFLI
Ga0272420_100019989	F019260	N/A	MSQSENISNILPSTPLASINEFITAAQFRTHVNNASEAXYTFLIELQTWFNDIITQYINXVSACQQEHEQTQIELKQSQANNKTLSEMVQELKSMSRIDIKSEKYSNSELYIEERENKLNQFIFELISKLKLNANRYSTLEFRLLYEYSRLSRNAVAQALPRMTAQHDKLVTIEQLVALLRQAFDDSDKQETAQRFISALRMRNRTFIEYLFDFQQHIDAIEYDVVIRKFNLKNELFSELKALLVQVNVSSLNYEQLITKCQQLNSRYRVTVQNLPKPKAVIHPASVTPTVLAYPVKYATSPTGSEATISGPRNLMNLSIANMKKRGPLTPEKRQHRMVNHLCLYCDKSGHQTAACNSKPKVQLRAVSLFAPATSTDNLASDTPPALEKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000199

Overview

Ecosystem & Geography

Associated Families

Sequences