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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000204 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 90719 |
| Total Scaffold Genes | 98 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (32.65%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F021452 | Metagenome | 218 | Y |
| F021896 | Metagenome | 216 | Y |
| F055319 | Metagenome | 138 | Y |
| F061402 | Metagenome | 131 | Y |
| F074204 | Metagenome | 119 | Y |
| F079402 | Metagenome | 115 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100020410 | F021896 | N/A | VTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMNERDSYSTIVIDESSIEVREI |
| Ga0272420_100020414 | F074204 | N/A | MIVFCILRQAQSRVFALALIDSEVSAYVFMNKFFAQQHHLLLHQLTHSRRLREFDDQVALIDDITHVVEITMILNEHIKRLFFYVTELSQYFIVMSLS |
| Ga0272420_100020415 | F055319 | AGCAG | MIEVRMKRLRLVDKMICIQISERDLAQRLDFFREQRDFFIYTDDVTVIDVHDTQSEELLI |
| Ga0272420_100020417 | F001951 | GAG | MTMKKLRFIDSSRNERERDEDTVKTTVTKVMIFELKELLVNAEMLLTLTNEMMTKTK |
| Ga0272420_100020418 | F102181 | N/A | MKEIMIVVHVHALYQILLSCIQSIFVSLILRYVKKLLESRSDEDSNRIRREMNDERRLIVQDLCDDLSYCRERLRIQFYID |
| Ga0272420_100020421 | F079402 | N/A | MNKNHFSIEEMKIAYVKSRVSETTIKHIAFRMRNTITNSFLEAEEILSIINKMYDDLNQHHTTQRQFLKLYQNKIFFHEF |
| Ga0272420_100020423 | F021452 | GAG | MLISCFINILNNSFDFKSFIVDVILSNLEKIFRFLALIDIEVTDMTFIDDSLISELCERFDIQSISLFKSKLIHSYDEIFDRRSITHALYISVTIQEHKNETMSLLITRLDQHKIIIDNL |
| Ga0272420_100020429 | F061402 | N/A | MTEFVDNNAISPSIEQSAFFLNKSFHSHMSFDLNSTEYEIIQARIQASKAENIFEHMK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |