NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000221

Scaffold Ga0272420_1000221


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000221 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87309
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (52.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F021896Metagenome216Y
F032102Metagenome180Y
F071806Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100022117F000597N/AMKDVLISSTMSMSDDSFASESLTIECVLSSNKISYSLKSLIDIKAADYSFIDEVITQIVCDQLQIESLTLIKAKLIREFDDHYAKKLITHVIYSNLTVQDHTIDRAFMLITRLDQHQMILEKT
Ga0272420_100022121F032102N/AMKIADLEKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNRRIQNEILYHDSQL
Ga0272420_100022122F013598N/AMNFIINLSDSSEYNAILTIICRLSKERHYISCITDDEDITVEKIAEMLIQ
Ga0272420_100022131F021896N/AMKNNLESEDFLKNVECNLTFLKSDKEYILSDEMSERDNYSTIVINESSIKVREI
Ga0272420_100022132F071806N/AMKLQSQIITLNSIQLHLFLIISALLQILVLMNLEIKEFNIENVESQLNQDTLNLDEDFADIFTQTL
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