NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000250

Scaffold Ga0272420_1000250


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000250 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82787
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (23.40%)
Novel Protein Genes20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (30.00%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021026Metagenome220Y
F021216Metagenome219Y
F028367Metagenome191Y
F033266Metagenome177Y
F035571Metagenome171Y
F038008Metagenome166Y
F038009Metagenome166Y
F052973Metagenome141Y
F061399Metagenome131Y
F064254Metagenome128Y
F066295Metagenome126Y
F075493Metagenome118Y
F094625Metagenome105Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10002501F052973N/AARLERNVFVTXKECDVDEQDVDERKECXKRKKRLSHIXVISESNLMQID
Ga0272420_100025015F038008N/AMKMKQSHLYMMTLXLKLLRIVIVTNKKISINQHCFNTFALKQRIYLNDSNNKENVTMIAMRINXELNKRLRRSTLVITHHEELKELIMKAKHLADVVIENQECHEKIYKVYSDNQTSLKTVKAMISTKDQTRLQQVQIMHESIQF
Ga0272420_100025016F064254N/AMQELYEFISSLFFLTFIXFFDNVTAXNXFSMLIESIIQMIIIAALMISKSFLKFMMFSSHCIAFHSIFHLKHVNKMCLIDIXSLLHSHVIIATSSTHLSCRNXLKSIFLMHNCINNALXDFAXFLCSRRCQYVIFNVKYXKXAALNFSFQTILHVYLIYFCMSINLVITSMRXCSVSNRNKSCASSIILFITSFSSISACFIIQCNFSMTS
Ga0272420_100025018F075493N/AMQSVQAMHEYMLRCLMTSFAVASQVIHVXNVSKVQISIQIYAFNSDVHCKNTFCFLKIITHLYHLIAQMQSLCXDYVDVCNTFSVLFSSLISLIFVILRYCDVIACXNHCEEEDASSASXLYLCIFSNEDIQKYYFLNDE
Ga0272420_100025020F035571GAGMSRILNLSAHANSMFKXICNKLVYVSVSRFSMLTLLNTFATXCRVXFXSVSSLCSLLNSSSFLSRXCQTDVSNTISDLTTAEYIYLAFVKIALHVKTLKXLSVSILVTXFIFIYXRCASHCSFMFSCIFRTRTSDFNLITEFSIYMLVIMLNLFDFLVKCMSLYFSDANVVSXVQAHFAQTLCALLNVLQISSVNLL
Ga0272420_100025028F021216N/AMKGRIKSNATRKEHHELKKVFKNHERSDDDHSNDTLNKHIESISSCDVIEESDERERK
Ga0272420_10002503F028367N/ALCKLDEILLKENYFEKSFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHSNLVNKVCEKLRIQSISLAKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADINHYEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSILLNSKHLS
Ga0272420_100025030F102180GAGLRELTLVITHHEELKELIARVKRLADVATKNQKYHEKIYKVYNDSQTSLKTVKVMISTKDQTRLQRVQIMHESI
Ga0272420_100025035F021216N/AMKSRIKSNATRRKHHELEKAFRNHKHNDDDHSNNTLNEHIESISSCDIIKESDERERE
Ga0272420_10002504F066295AGAAGLKTKLQAKEITSSDFIYSERSRSQKISDSSLFTDEKNFTXENXYGKIQNKLEINVDLFSNERVKLSYIHSRLFNDAAEITQARCKRDYVNFYRIVDDLLKELAQLFNDSNKKVNFHREYYNLIQEFKKFSEFYTQFQRLSFYLDYHEK
Ga0272420_100025044F038008N/AMKXNHFHMMIFXSELSKVIIVTNKKMSISQHHFNIFALKQKVYLNNNNSKENVTMTAMKINXELNKRLRRLTLIITYHEELKELIAKMKHLADIVTENRECHEKIYKVYSDSQTSLKTVKVMISTKDQTRLQXVQIAHESIXSXEVMLKLH
Ga0272420_100025045F064254N/AMQELYKSISSLFLFSFIXFFNDVTAXNXFSMLIESIIQMIIIAALMIFKSFLKFVMFSSHCIAFHSTFHLRHVNKTCLINIXSLSHLHIIIVTLSTHLLCKNXLKSIFLMHNCINNALXNFTXFLCSHRCXCVIFDVKYXKXVVLNLSFQTIFHVYLICFCISINFIITSMC
Ga0272420_10002505F033266N/AMPSRSSTEERFEEFRNRFFQISDADSLKSRTKSSSAASFIHEDDESFAETIIFLVFYEIXKAQSLVLDEETDQLYKLNK
Ga0272420_100025060F061399N/ALHFLSVFKRCXRDIFMNYVNSLLLSIFMNITYKYVLVFVDHLIKMKHLVLITFMKVEKVINCFYAYVXKYQNLLEFFMSDXDTQFIFNVXKHMCKMLKINIKLSTIYHFEINNQIKKVNAVMKHYLQVFVNYMQNDXAKXLSEVKFIINNASSLITLTSLFLINLSQNSCLNFKFFESLLKNLTSQAXNKLINVKEFIKKMKKLTEHLHDKMLIAQIIYKFNVNLFYHSYFKYFVEDEVXLNACNLNIIRFAVKLNDCNIDFFKIKCVFKNNFLIIELNLSAFMKIHLIFHVILLSHITSDFLSSQHQKS
Ga0272420_100025064F038009GAGMIKASSFQLNYVKLYRKLIELICSKNNRSSKEKRISTLNFXXVFFLNDLKNTTRNFLFQTRDKTEXDLFLVNELSISXLFISEREIILLLVSRRKTELLLASKLRTELLLVSELKTELLLSSEXETRLLLASKLNAELLLVSNL
Ga0272420_100025065F021026N/AMIVFCILRQAQFKVLILILIDSEVSAYVFMNKFFTQQHHIFLYQLTHSCRLQEFDDQVTLINNITYVVKITMILNEYIKKLFFYVIELSQYFIIMNLSXLHHHVIDVNFEHNILILSFFFCLNHCCSFFIKIYDFNQQEENFLFKVNKVAFSQSHSQFAHKK
Ga0272420_100025066F001951N/AMTMTKFRFIDSSRNEKEKDEDTVKTTVTKMMIFELKKLLINAKMFLTLMNEMMTKMK
Ga0272420_100025067F094625N/AMKSLHNLLINDEHVVEQFTQSIIENSVEIFRVMRELQNQVRQHDVIILFSFIILNSSIYIKLNSQFLATIIQIVAQILNNQSSFVVHFFANFIAVFITFRFKKLFDIFKYEKNKDXLNAXKQSLIQRMNMNNNHYLFHQVKIIYVESXLIIDKKTHNLMNQYQVNDLCIIFIFAD
Ga0272420_100025080F038009GAGMIKALSSQLNYVKLYKRSIELICLKDNRSFKKKRISTLDFXXVFFLNNLKNITKSFLFQMRNKTEXDLFLVNELNISXLLVSEXEVILLFVSKRETELLLASELRIELLLVSELKTELLLLSEXETELLLASELKTELLLSNEXRTKLLLASKLNVELLLINDL
Ga0272420_100025082F001951GAGMTMMKLKFIDSLRNERERNKDTVEITVTEMMIFELKELLVNAEMLLTLMNETMMKIKQD
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