 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000255 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 81740 |
| Total Scaffold Genes | 108 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (39.81%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005901 | Metagenome | 386 | Y |
| F013598 | Metagenome | 269 | Y |
| F017767 | Metagenome | 238 | Y |
| F021896 | Metagenome | 216 | Y |
| F032102 | Metagenome | 180 | Y |
| F036036 | Metagenome | 170 | Y |
| F044226 | Metagenome | 154 | Y |
| F074204 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100025511 | F044226 | GAG | MMKFSDNSNIFSISSMIFFYFNKKFHSRMSFNSDTTDYETICERLEARKINDIII |
| Ga0272420_100025528 | F074204 | N/A | MIVFCILCQAQFKVFTLALIDSEVFAYVFMNKFFMQQHYLFLHQLIHFCRLQEFNDQITLINDITYVIEITIIFNEYIERLFFYVIELSQYFIIMSLS |
| Ga0272420_100025531 | F021896 | N/A | MTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSERDSYSTIIIDESSIEVREI |
| Ga0272420_100025539 | F036036 | N/A | MLVSLIHHLFSCFDQSFISEDQCLVHLFRYILDLIDLQAFASAFILDDVRVEAHMRMKVLVHEEEDQEDD |
| Ga0272420_100025540 | F013598 | N/A | MNFIIDLSNSSEYNAILTIICRLSKERHYISCIIDDKDITVEKTAEMLIQ |
| Ga0272420_100025541 | F032102 | N/A | MKIADLKKNISESIYKQILETNEIDENCTLLREAIAEDETQYEDIKLKNCRTQNEILYHDSQL |
| Ga0272420_100025546 | F017767 | N/A | MKDVLISLTTSMSDDSFASESLTIECVLSSNEISYSLKLLIDIEAADYSFIDEVIAQIVC |
| Ga0272420_100025547 | F005901 | N/A | LHSYISIDELFEHLKEIYDELNKNRKCRREYNTLRQADKSFNVFYFDFMKLFSYLKYNDCILLNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNSKQRVNYQLCSERCTVIVKVTVVSDKRVTSLSVTISIIDYVKSIISSISESVRSSIICYICKTLDHLFKNCSQLNKIDTSASHAFILHIHEIIISKNKENEKMSFENSEAKN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |