NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000265

Scaffold Ga0272420_1000265


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000265 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80534
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (19.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F040408Metagenome161Y
F055318Metagenome138Y
F075494Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100026527F055318N/AMLRDDEALCIDYMQSFRDYADFNNLNAHATSNLYADEKVK
Ga0272420_100026533F075494GAGMFVYSVSERKYLAKHVESRSQDDIYCTXVINEVKKMSVYNVSENISKCLAVYVKSVLLRVMTLVMQKTHLNEVYFSRNKISXSEHENLKRHDNETLTHRNHNIVKKQLNFVAETVDCKQLISRAIVRVLTIHETIYNFNNKFIIELIKILQQEDKFVVKLKADKMMSI
Ga0272420_100026556F000597N/AMKDVLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYLFIDEVITQIICDQLQIESLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHMIDIASMLITQLD
Ga0272420_100026557F003820N/AMKLFSYLDYDDCTLINDLQNKINNRLQNALSVCSENFTSLSRLKKFLQDVNNKQRVNYQLRSERCTVIIKVTVVSDKRVTFLSMMTSIINYVKLTIFSTSESARSSIICYICKISSHLFKNCSQNKINILTSXAFIFHLHEIIILKNKENEKMSSFKNSEAKN
Ga0272420_100026560F040408N/AMYDYELIFDIHIENDAMKEEVSAAKEHIEMLQDVXNTLM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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