NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000288

Scaffold Ga0272420_1000288


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000288 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77570
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (44.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F038010Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10002882F006206GAGLCKLDEILSKENYFEKSFLIDTHLISQNRSFSLRFLIDSDSVVYTIIHSNLVDKVCEKLEIQSISLAKEKLIRDYDGKISKKIITHKILPNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272420_100028827F038010N/AMNNDHLVLSDNLESNKINVNLSVLININVIDYAFIDDSFVQRHFLFCFSLSEICILQRFDNQSVVFNSITHYALVKLQVSSEELEEIFFYVTQLLQFLVVLDLL
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