NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000336

Scaffold Ga0272420_1000336


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000336 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70848
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (40.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036035Metagenome170Y
F037509Metagenome167Y
F070712Metagenome122Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100033611F070712GAGMNDIKEKKSMIKIRKQVIFADEVSRTFYRKIEVTTLVNYSKSHDAILTNVKNIDLQAEICFICHKSDHTSREYSDQSRVNVLKDDEFNRLNSDSDSDSKN
Ga0272420_100033613F037509N/AMILIFILIQIYSTDNEMNIKKFVYLMINDIERQNNIKKSIESTKTYDHVIARESIAQLVASVQIDX
Ga0272420_100033622F036035N/AMKDRMKDDAMQKEHHELEKASRNHERDDSNHLNNTLDKHTASISDCDVIKKLNEREEK
Ga0272420_100033639F102179N/AVINEVEKMFVHSVSENTSTCSAMHVRSMLLKIMTLAVQEMHLDEVHFSRDKISQFESTTLRSTNVETLTYRDCNVAEKQLNSVAETVDCKQLISRAIVKVLTIHEMTYDFSSKFIVKLIKILQQEDEFAVKLRADETTSI
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Institute for Fundamental Biomedical Research
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