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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000360 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 67841 |
| Total Scaffold Genes | 84 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (52.38%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F036036 | Metagenome | 170 | Y |
| F048019 | Metagenome | 148 | Y |
| F058565 | Metagenome | 134 | Y |
| F070711 | Metagenome | 122 | Y |
| F102179 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100036011 | F000597 | N/A | MKNVLISSMMSMSDDSFASESLTTEYVLSSNEISYSLKLLINIEAADYLFIDEVIAQIVCNQLQIKSLTLIKAKSIREFDDHYAKKLITHIIYLNLTIQDHMIDIASILIT |
| Ga0272420_100036012 | F036036 | N/A | MLVSLIHHLFSYFDQSFMSEDQCLVYLFRYILDLINLQAFASAFILDDVRVEAHMRMKALVHEEENQEDD |
| Ga0272420_100036013 | F013598 | N/A | MNFIIDLFDSSEYNAILMIICRLSKKRHYISCIIDDEDITVEKTAEMLIQ |
| Ga0272420_100036014 | F017941 | N/A | MKIADLKKNINESIYKQMFETNEIDENCMLLCEAIARNKIQYEDIKLKNC |
| Ga0272420_100036019 | F070711 | N/A | MKDVLISSMMSMSNDSFTSESLIIECVLSSNEISYSLKSLINIEAADYSFIDEVIT |
| Ga0272420_100036025 | F102179 | N/A | VINEVEKISVHSVSKNMNTCSAMHVRSMLLRIMILAVQEMHLDEVHFLRSKISQLESTTLKSTDVETSIHRDRNVVEKQLNSVVETVDCKQFISHAIVRVLTIHETIYNFSNKFVVELIKILQQEDEFAVRLKADKMMSIQKSNVKA |
| Ga0272420_100036027 | F048019 | N/A | VNKHAFKLFFAQVFAKALQDESTMYAFIMINVVKKLIVEHQVKAMNNVMNCIINTLKTQTLFIELKEYKDIFLIESADKLSLHEDHNHAIEITAKSSYESLYNLLNTELATLKQYLNNVLVKE |
| Ga0272420_100036030 | F058565 | AGAAG | MMNCMNCSNADLKMIVNDIDSLQENKDAKLKHLHNDEENVVNIIDLLIKISTLEKKKSKDHS |
| Ga0272420_10003606 | F013598 | N/A | MNFIINLSDSSEYNAILMIICKLLKKRYYISCIIDDEDITVEKTAEMLIQ |
| Ga0272420_10003607 | F017941 | N/A | MKIADLKKNISELIYKQIFETNEIDENCTLLREAITKDETQYEDIKLKNC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |