NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000373

Scaffold Ga0272420_1000373


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000373 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67202
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (20.51%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y
F023763Metagenome208Y
F061400Metagenome131Y
F074202Metagenome119Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100037312F086377N/AMIQCFXDQRQRILILDCDSVQILIVHAEAKFFFEFLDEENKDDCLRATDLNEIFAQIFIQITMKF
Ga0272420_100037322F074202N/AMKLXNFKMCVYEXSLFKCRKEIYIYVEKCLQLLYRXFRLQSLFLTKLLEKCVSNFIKTVNCKINCKTIYMSFLLMSSCLFCSDNAFNLALLLNDNLFLKLVISKLRLRVETELNFKEEVILRCSFFTAKDDNLDSSFNLKTVMNFIKFLXFTIFYNDXSSFFNLFLSVKCDVTRSKXADAENXAFESEVVVDLAVLSNVDNMSSSKFKNLDCEDVIKRSTSIESLFFSSDIVN
Ga0272420_100037324F023763N/AMSRIKCISLFRKIFXATCQSIQLIINLVEMISDVIVESKQKLTSTSLMMTQLLSXHEILKIFVIRDHLNKINKVFKLXLSFLESANNDHEFFIVDFIVTLDXVMLLQKVSDXMKNFVFIILKENVFKHIVXSIDFYYNLVIXIIVMKNNLKSEDFLKNVECNLTFLRSDKKYIFSDETSERNSYFTIVINESSIEVREI
Ga0272420_10003734F008735N/AMKEIMIIIHVHALYQTLLSCIQLIFVSLIFRYVKKLLESKSNKDSNRVCKEMNDNKRLIIQDLCNDLSYHYKKLKIQFYINXRIENDEXRXSNDIMLSNLILKLTHCMKNLNXIFDHTLNKLFNSMLIVNQEIVRXLHLSERITRXDFNIXKRCKKCKSFIMSEIKLN
Ga0272420_100037351F061400N/AMLLKYYNRIMNLNSEKTIIKAXNIYCREEDEDNAIDELYNSFKTDLQNVLRSINV
Ga0272420_10003737F009580N/AMKRLKLVNKMICIQISKCDLVQKLNFSCKQRDFFIYIDDVIVINVHDTQSEKLLIXAFFNDFAQMLQLAVVAQLSLVADFLDLKNDQNLSLNDDNDEA
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