NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000374

Scaffold Ga0272420_1000374


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000374 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67178
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (26.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F074204Metagenome119Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100037462F021896N/AMMKNNLESKDFFKNVECNLTFLRSNKEYIFSDEMSERNNYSTIVIDESFIEVCKI
Ga0272420_100037466F074204N/AMIVFYILRQAQSKVLTFALIDNEVSAYVFMNKFFTQQHHFFLHQLIHFCRLQEFDDQVTLINDITHVVEITIILDEYIEKLFFYVIKLSQYLIIMSLS
Ga0272420_100037468F001951N/AMTKLKFINLLRNKRERDEDTVETTVTKMMIFELKELLVNTKIFLTLMNETMMKMK
Ga0272420_100037470F102181N/AMREIMIIVHVHALYQTLLSYIQSIFVSFILKFVKKLLKSRSNEDNDRICKRMNDEERLIVQDLYNDLSYHCKKLRIQFYID
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