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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000383 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 66231 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (5.71%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038484 | Metagenome | 165 | Y |
| F040408 | Metagenome | 161 | Y |
| F061400 | Metagenome | 131 | Y |
| F075493 | Metagenome | 118 | Y |
| F075494 | Metagenome | 118 | Y |
| F104134 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100038326 | F061400 | N/A | MNLNSEKTIIEAXNIYHREEDEDNVIDKSDDSFKTDLQNVLCFINI |
| Ga0272420_100038331 | F075493 | N/A | MQSVQAVHEYMLHHLMTSFAVASQAIHVXNISKVQISIQIYAFNFDVHCKNVFYFLKIITYFYHLIAQMQSLCXDCVDVCNAFFVLFSSLISLIFVILCYCNTIICXNHCEEENVSSVSQLYLRIFLNEDIQKYYFLNDEXARNDAINSCQTSAY |
| Ga0272420_100038342 | F104134 | N/A | MSLLLSLQSDMIKFLXSVNTSAIFCRICSINFFCIFFISLLFIILIMTFHLLXSDDKSSLNRCSFVFISSLVTFAHDVIFVERCMLLCVCNCLLSSXIDIFSFCTFFAMNAFXFMXCFSSELSQRHXIIFNAISFHKXSLLFSFSNVDIFISKSIMLATFSLSLRKHFDSTSLFSCDESTSLVIIFESALLQFMQFIVVQSSFIFTLSCL |
| Ga0272420_100038349 | F040408 | N/A | MYDYKSIFDIYIKNDVMKEEMLTAKEHVEMLQDVQNMLMQXX |
| Ga0272420_100038356 | F075494 | N/A | VINKVEKTFIHSISERRYSAKHVESRSQDEIYCTXVINEVEKMFIHNVSENMSTCSAMHVRSMLLRIIILAVQEMHLNEVHFSRSRISQFKSTTSRSTDVEMSTHRDHNVAEKQFNSVTEIVDCKQLISRTIVRVLTIHETTYKFSSKFIVELIKILQQKDEFVVRLRADETTSIQKSDVEAXTLNS |
| Ga0272420_10003836 | F038484 | N/A | MRLILMCVARMLSAFXRSSRIFIILLLRCDLCAEIALMSATRSLYFSHRXFHXSLXYCAIAMLSLIEAVAERNNHLRLICILVPSRIELFRSTTFLMMSEREMTRLNFVKQARINSHACLISCVQSLTRLCSVILFCSMFKXTCSELVYVSVSKVSMLTLLNASATXRRVXFXSVSSLHSLFDNSSFLSRXCQTDASNAISDLTIAEYTCLAFVKIASHVKTSRXLSVSILMTXFVSICLRCASHRSFVFSCISRTHTSDFDLITEFSICMLVIISNLFDFLMKCVSSYFSDVNVASXVQAHFSQTSCALLSVLQISSVNLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |