Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000392 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000392 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64878
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (28.38%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

64878

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (28.38%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F028667	Metagenome	190	Y
F035571	Metagenome	171	Y
F038008	Metagenome	166	Y
F041516	Metagenome	159	Y
F048018	Metagenome	148	Y
F086375	Metagenome	110	Y
F094624	Metagenome	105	Y
F094625	Metagenome	105	Y
F096307	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100039213	F048018	GAG	MIQRCSLFELSMYFLSQKYRXFSCFSHSTRKILLXCCASLQSASIIXAANLSLISICSYNVXVKISAESSSRFRMSXFSXDLMFSTSNSSISRFMKVRIYEDAEITENKYNXTESKAIICDXSFMTLMLKMSRTRLLTILRFKTXVFRIVXCXYXC
Ga0272420_100039217	F028667	N/A	MTRDSESVESRTARLLRSIASRRVFLISFDALVKSQNVVISXDINTSQQLCQXVIDQSDKIIKMLIELRDQRDMTLKLNEQXIDLQVDHIKRLDELKINQTTIDTQEETIIKLREKVLSLKKKQHLANQSQSXQSTKSRASIENHTRRESFTLFNNDHHKFFKFLNLSIFIDEDKSTXNSXRIKINDKLQTNVDHFDNENICIVYVIFRLEDDTAEHIFAQHXHDALHSYISIDKLFEYLKEIYDELNKNRKCRREYNALRQADKSFNVFYFNFMKLFSYLEYDDRTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQQVNYQLRSERCTVIVKVTVVSDKRATSLSVTTSIINYVKLTISSISESARSSIICYICKIFDHLFKNCSQLNKIDTSASCAFTSRLHEIVISKNKENEKMSFKNSETKN
Ga0272420_100039223	F009580	AGTAG	MICIQISERNLTQKLNFSCKQXDFFIYIDDIIVVNVHDMQSEKLLIXAFFNNFAXMLQFAIVAQLSLVADFLNLRNNQSLILNDDNNKA
Ga0272420_100039241	F038008	N/A	MKMKXSYFYMMILXSKSSRVIIVANKKILMNQHHFNTFALKQKVYLNDNNNRENVMMIAMRINXKLNKRLRELILIITHHEELKELIVRAKHLADVMTENQEYYEKIYKVYSDSQTSLKTVKVMILTKDQTRLQXVQIMHESIQFQEVTLKLH
Ga0272420_100039245	F041516	N/A	MLQTLTNNTQMIQKVIYIHEAYNLSLKNHEVIHEKESLSDIEKMLHMSKECVLVENFNLHHLTXEKSFYSR
Ga0272420_100039249	F086375	N/A	MFTLFVNSKSITSRNRDENXFNEIKEHYKRQNNDRVIIFKRLHKLKQFNVXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNAS
Ga0272420_100039261	F096307	AGAAG	MLYIVVTQIDASLKENVLKHKKDVDSKDVCDTKKCVCHRHLLTTRNTKKCVYLEDNRSXLENAKKEKRCXVISESNLSQI
Ga0272420_100039262	F035571	N/A	MYVSVFKVSMFTLLNISATXCKVXFXSVSSLHSLLNSSFFLSRXCQTDALNAISDLITAEYTCLTFVKIALHMKTSRXLSISILVTXFVFICXRYASYCSFVFSYTSRTHTSDFNLITEFFICMLVIMLNLFDFLVKCVSSYFSDANVASXV
Ga0272420_100039264	F094625	N/A	MKSLHNFLIDDERAVEQFTQSVIENSVEIFRVMQELQNQVQQHDVIISSSFIILNSSVYIKLNSQFLMMIVQIIAQILNNQSSFVVYLSVNSVVVFIASRFKKLLNIFEYEKNKDRLNAXEQSLIQRMNVNDDHYFFHRVKIIYVKSXLIINKKTHNLMSQYRVNNLCIIFIFAD
Ga0272420_100039266	F001951	N/A	MMKFRFIDSLKDEKERDEDTVETTVTKMMICELKELLIDAEMLLTLMNETMTKTK
Ga0272420_100039267	F009580	GAG	MICIQISERNLTQKLNFSYEQRDFFIYTDDITVVNIHDMQSEELLIXAFFSNFAXMLQLAVVVKLSLVADFLNLKNDQSLILNNDNDEV
Ga0272420_10003929	F094624	N/A	MQNDXAKXISEVKFIINNASLLITLTSFFLINLSQNSRLNFKFFESLLENLMFQAXDKLINVKKFIKKIKKLTKHLHDEMLIAQIIYEFNVNLSHRFCSKYFVEDEVXLNAYNLSIIHLTVKLNDYNVDLFKIKHVFKNNSLIIELNLSAFMKIYLIFHVILLNYIISDFLLSQHQKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000392

Overview

Ecosystem & Geography

Associated Families

Sequences