NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000402

Scaffold Ga0272420_1000402


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000402 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63984
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (51.72%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F021452Metagenome218Y
F040408Metagenome161Y
F069514Metagenome123Y
F079402Metagenome115Y
F094626Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100040231F094626GAGMKQVNKHRKEVDYKIESKMFLNERNIVTVRSFKKLNDKMLDSFINLDLIDSSYKLKLSKSMHVHDVFRSDLLRSVVDDFLSDQKNESSDSIVINDEDE
Ga0272420_100040232F069514GAGMIKFIDNNALFSVIFSISFFLNKDFHSHMNFELDVIEYESFRERLQTTKVENISEHMNKTLKFARESLVKT
Ga0272420_100040236F001253GAGVTFIKDAMKDVLISSTTSSSNDLFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKFKSIRKFDDHYAKKFITHAIYSNLTVQDHMKRFVSMLITRLDQHQMILEKT
Ga0272420_100040241F021452N/AVTESNILIFCFISMSDDSFGFKSFTVDIILNSLEKIFRSLALIDIEVIDMTFIDESLMSKLCERFDIQSISLSKSKLIRSYDEISDRKSITHALYTSIMIQEHKNEMMSLLITRLD
Ga0272420_100040242F079402N/AMRNKLKINKNHFSIEEMKIAYVKSRVSETTIKHIALRMRNTITNSFLEAEEILSIINKMYDDLNRCHTTQRQFLKLYQNKIFFHEF
Ga0272420_100040244F040408N/AVHDRNSLFKVMYDYESIFDIHIENDAMKEEVSAAKERVEMLQDVQNTLTK
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