NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000406

Scaffold Ga0272420_1000406


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000406 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63382
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F001951Metagenome612Y
F021896Metagenome216Y
F037508Metagenome167Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100040663F102181N/AMKEIIIIIHVHALYQTLLSCIQSIFVLLIFKYIEKFLEFKSNEDNDRICKKMNDEEKLIVQDLCNDLSYHCKRLRIQLYIN
Ga0272420_100040665F001951N/AMMIIMKLKFINSSKDEKEKNKNIVEITVTKMMIFKFKKLLVNVKMLLTLMNEIMMKMK
Ga0272420_100040670F021896N/AVTKNNLESEDFLKNVECNLTFLKSDKEYIFSDKMNERCSYSTIVIDESFIEVREI
Ga0272420_100040673F037508N/AVNHYSTEKIRIVYVIFRLEDDADQQIYAKRRVDAFSFYQSLSELLKHLKEIYEDQNLIRKCHREYIALKQLNKLFSSFYSEFTRIFSFLNYDNVTLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLRDEQ
Ga0272420_100040674F001253AGGMKDVLISSTTSSSNDLFASESLTTKCVLSSNEISYSLKSLIDTEVADYSFIDELIAQNVCDHLQIEPLSLIKLKSIRGFDDHYAKKLITHAIYSNLTVQDHMKRFASMLII
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