Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000422 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000422 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	62018
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (17.54%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

62018

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (17.54%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (38.46%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F021026	Metagenome	220	Y
F028667	Metagenome	190	Y
F038009	Metagenome	166	Y
F048018	Metagenome	148	Y
F055319	Metagenome	138	Y
F061399	Metagenome	131	Y
F071806	Metagenome	121	Y
F080690	Metagenome	114	Y
F089602	Metagenome	108	Y
F094625	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100042210	F038009	GAG	MIKASNSQLNYVKLYRRLIELICSKNNRSSKERRILTLDFXXVFFLNDLKNMTRSFLFQTRDKTERDLFLVNELSISXLLMSKREVILLLVSRRETELLLSSEXETRLLFASELKTELLLSSEXETRLLLASEXETRLLLASELSAELLLVSDL
Ga0272420_100042219	F055319	AGCAG	MIEVKMKRLRLVDKIICIQIFERDLAQRLNFSYEQRDFFIYTDDITVINIHDMQSEELLI
Ga0272420_10004222	F094625	N/A	MKSFYNLLIDDERAVKQFTQNMIENSVEIFRVMQEFQNQVXQHDVIISSSFIILSSSIYIKLNSQSLAMIVQIVAQILNNQSFFIVHSSANSVAVIITSRFKKLLDIFEYEKNKDXLNAXEQSLIQCMNMNDDHYLSYRVKIIYVESRLIINKKTHNLMNQYRVNDLCIIFIFADX
Ga0272420_100042220	F021026	N/A	MIVFCILRQAQSRVFVLALIDSKVSAYVFMNKFFTQQHHLFLHQLTHSCRLXEFDDQVALIDDITHVVEITMILDEHIKKLFFYVTELNQYFIIMNLSXLHHHVIDVNFEHNILILFFFFCLNHCCSFLVKIYDFNQQKENFSFKVNKVAFFQSRSQFTHKK
Ga0272420_100042224	F071806	N/A	MKLQSQIIALDSVQLHLFSVISALLQILALMNLEIEEFNIEDVKSQLNQDILNLDEDSADIFTQTLXK
Ga0272420_100042225	F061399	N/A	MCTRFKLFRQXTQEXLSFLSVFKRRXRDILMNYVDSLSLSIFMSITYKYVLVFINHLIKMKHLILITSMKVEEVINCFYAHVXKHHDLLKFFISDRDTQFIFDVXKHICKMLKIDVKLLMMYHSEIDDQIERINAVMKHYLRVFINYMQKNXAKXLSEIEFVINNASSSITLTSFFLINSSQNSHLDFESSESLFKNLMFQVXDKLINVKEFIKKMKKLTEYLCDEMLIAQIIYEFNVNLSCHSCFKYFVKDKVXLNVCNLSIAHLAVKLNDHNIDFFKIKHVFKNNSLIIELNLSAFMKIHSIFHVTLLNHITSDFLSSQHQKSXELIIIKNDERFXYVNSILNFKRDKCYTLFLLKYYID
Ga0272420_10004223	F089602	N/A	MKDEXLSFIEISSEENNGLSEIIDIALQTVNQREIFHQRTFFLLIEEIVVVNKAIHVLLQSFTKI
Ga0272420_10004224	F028667	N/A	MTFIXLALCRFLTVNKCXSTTLLSTCRXYEIIHFYSENSQEILXITFIKTHIQIYSNLSNQSLNLIIIYLSIFIFLIMTRDSESVESRTARLLRSTASRRVFLISFDASARSQNVAISXNINMSQQLRQXAIDQSDEIIKMLIELRDQQDMTLKLNEQXIDLQVDHIKRLDELEINQTTIDTQEKIITELXKKVLNLKKKQRSVNQSRSQQSTKSXASIENHTXRELFTLFDNDHHKFFKFSNSSIFTDEDESTXNSXRVKIDDKLQTNVNHFDNENICIVYVISRLEDDAAEHIFTXRXHDASHLYILINELFEHLKEIYDELNKNQKCRREYNALRQANKSFNVFYFNFMKLFSYLEYDNCTLMNDLQNKINNRLQNALSICSKNFTSLIRLRIFLQDVNSKQRVNYQLRSERCTVIVKVTVIPNKCATFLSVTTSIINYVKSTIFSIFESARSSIICYICKTFDHLFKNCSQLNKIDTSASCAFISRLHEIIISKNKENEKMSFKNSKTKN
Ga0272420_100042246	F048018	GAG	MIQRRSLFELSMYFLSXKYRXFSCSSHLTREILLXCHVSLQSASIIXAANLSLISTYFHNVXVKISAESLSRFRVSXFSXDLTFSTSNSSISRFIKVRIYKNIKIIKDRCNXTEFKAMICDXSFMILMSKMSRVRFSTILKSKIXIFKIV
Ga0272420_10004226	F080690	N/A	MKSSHNLSIDDERAVEQFAQSVIENSVEIFRVMQELQNQVRQHDVITSFSFIVLSSSIYIELNSQFLVTIAQIIAQILNNQSSLIIHSSANSVAVIIASKFEKLFDISEYKRDKDRLNAXEQSLIQRMNVNDDRYFSYRVKIVYVESXLIIDKKTHNLMNQYRVNDLCIIFIFADXXHKLHHCCDNSFKTEDARLYLRETLKQDTNSFFDYYNLFYQKKEYFLMKDFSLIDCLKRNVNYFTQVIVFF
Ga0272420_10004227	F001951	GAG	MTMTKLRFIDSSRNERERDEDIVETTVTEVMIFELKELLIDAEMLLTLTNKMMMKTK
Ga0272420_10004228	F009580	AGCAG	MIEVRVRRLKLVDKMICIQISERDLAQRLNFFRRQRDFFIYTDDVTVVDVHDTQSEKLLIXAFFNDFARMLQLAVVAQLSLVADFLDLRNDQSLILNDDNDEA
Ga0272420_10004229	F021026	N/A	MIVFCILRQAQSRVFILALINNEVFAYVFMNKFFAQQHHLLLHQLTHSRRLQEFDDQVTLIDDIIHVVEITMILDEHIERLFFYVTELNQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCQTLVKIYDLNQQEENFSLEVNKVASLQSRSQFTHKKQLSLQITHKKQFST

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000422

Overview

Ecosystem & Geography

Associated Families

Sequences