NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000425

Scaffold Ga0272420_1000425


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000425 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61699
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (26.32%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F013598Metagenome269Y
F017941Metagenome237Y
F019260Metagenome230Y
F038010Metagenome166N
F098339Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10004252F017941N/AMKIADLEENISESIYKQILETNRIDENCTLLREAIARDETQYEDIKLKNC
Ga0272420_10004253F013598N/AMNFIIDLSDSSKYNAILTIIYRLSKERHYISCITDDEDITVKKTAEMLIQ
Ga0272420_10004254F098339N/AMIEFVDNNVLFSVIFLTFFFMNKNFHSHMSFDSDIIEYESTRECLQIDRTKNISEQMNKTLIFAREALIKTRERMMKQTNKHRKKINYEIESKMFLNE
Ga0272420_10004256F008668GAGMIEFSENFNIFSIISMTSFYFNKNFHSRISFDSDMTDYETTRERLEAKKADDIIIQMKELLIFDHQQLRKTKQIIEAQINKHRRDVIYEVDD
Ga0272420_100042570F038010N/AVNNDHLVLSGNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHFLLCFPLSEICILQEFDDQSVVFDSITHYALVKLRVSSEKLEEILFYVTQLSQFSVVLDLL
Ga0272420_100042571F019260N/AMIQELKSMSRIDIKSEKYSNSELYIEERENKLNQFIFELIRKLKLNANRYSTLESRLLYEYSRLSGNAVAQALPRMTAQHDKLVTIEQLVVLLRQAFDDSDKQGIAQRFISVLRMRNRTFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQVNVSSLNYEQLVIKCQQLNSRYRVTVQNLLKSKAVIHPASVTPTVPAYPAKYATFPAGSEATTSGPENPMDLSIVNMKKRGSLISEKRQHRMINHLCLYCDKPEHQAATCNSKLKVQLRAVSLFALAISIDNLAFDTSPALGKV
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