NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1000479

Scaffold Ga0272420_1000479


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000479 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58604
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (23.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020121Metagenome225Y
F021026Metagenome220Y
F035571Metagenome171Y
F075493Metagenome118Y
F076668Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100047918F076668N/AMTCLLLTSXFLARSSARKKSMNSIDSYAIKETTSVFESTKKIMHMSNALLTDMLMLCNRKLKDATNQKXLHCARFENIRSQSKISFSKXSSNDLXERLCTTVLAKICYHMTIAFSALSXVLFKKSLKTLCAFLCKVSALLFRIITLVVEFSLTFCSMQTSTXQQFMSNASSFKIEIXDL
Ga0272420_100047930F021026N/AMIIFCILRQAQSRVLTFALIDSEVFAYVFMNKFFTQQHHLFLHQLTHSRRLQEFDDQVTLIDDIIHVIEITMILNEHIERLFFYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCQTIVKIYDLNQQE
Ga0272420_100047933F020121GAGMKKLTEHLRDEMLIAQIIYEFNVNLSCRSCSRYFIKDEVXLNACNLSIAHLAVKLDDRNIDFFKIKRVFKKNFLIIELNLSAFMKIHSIFHVILLSHIACDSLSNQRQKSQELIVIKNDKRFXYVNNILNFKRDRCYNSFLLKYYINXKDHFSTXESFHLLNNCEQTLNEYHLVNSVAEESHVLSCVMSQCQCQEL
Ga0272420_100047937F075493N/AMQSVXAMHEYMLHRLMTLFAVTSQTIHVXNVSKVQINIQIYALNSDVYCKNAFCFLKIIMHLYHLIAQMQSLCXNYVNICNVFSVLFSSLISLIFVILHYCNAIACXNHCEEENASFASQLYLRIFLNEDIQKYYFLDDEXVRNDAINFRQMNMY
Ga0272420_100047938F035571GAGMTRLTFVKXTCINLHACLIFCIQSLTQLCNVILFYSMFKXTCNKLMYVSVFKVSMFTLLNASATXCKIXFXSVFNLHFLLNSSSFLSRXCQTDASNAISNFTIAEYTCLAFVKIASHVKTLRXLSVSILVTXFIFIYQRYASHCSFMFSCIFRTRTFDFNLITEFSIYMLIIMSNLFDFLVKCKSSYFSDANVTSXMQAHFAQMLYALLSVLQISSVNLS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.