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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000486 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 58165 |
| Total Scaffold Genes | 74 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (29.73%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F021026 | Metagenome | 220 | Y |
| F023763 | Metagenome | 208 | Y |
| F040408 | Metagenome | 161 | Y |
| F048018 | Metagenome | 148 | Y |
| F089602 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100048640 | F008735 | N/A | MKEVIIIIHIHALYQTLLSCIQLIFVSLIFKYVKKLFESRSNEDSDRVCKKVNNERRLIVQNLYDNLNYHCKRLRIQFYINXRIENDEXRXDDNIMLSNLILKLMHYAKYLNXIFNHTLSELFNSTLIINQEIVKQLYLSERVPKQDFNVXKRCRKCRSFIMSKIELN |
| Ga0272420_100048641 | F089602 | N/A | MKDEXSSFIKISSEEDDDLSEIIDIALQIVNQXEIFHQRTFFLLIEKIVVVDKVICILLQNFAKI |
| Ga0272420_100048642 | F001951 | N/A | MTKLRFIDSSKDEREKDEDIVETTVTKMMIFELKELLVNAEMLLTLMNEIMMKTKRD |
| Ga0272420_100048643 | F009580 | GAG | MIYIQIFEHDLAQKLNFSYEQQDFFIYINDIIVVNVHDMQSEELLIXAFFNDFAXMLQLAVVAQLSLVADFLDLRNDQNLILNDDNDKA |
| Ga0272420_100048644 | F021026 | N/A | MIVFCILRQAQSRVLILTLIDSEVSAYIFMNKFFTQQHNFFLHQLTHSCKLQEFDDQVALINDIIYVIEITMILDEHIKRLFFYIIELSQYFIIMSLSXLHHHVIDVNFEHNILILSFFFYLNHYYSSLIKIYDLNQQEENFSFKVNKVTFFQSCSQFTHKKQLSSQITHKK |
| Ga0272420_100048651 | F040408 | N/A | MYDYESIFDICIENDAMKEEVSAAKERVEMLQDMQNTLMQXX |
| Ga0272420_100048658 | F023763 | N/A | MSLMMTQLLNXHEILKIFVICDHFNKINKIFKLXLSFLESANNDHEFFIVDLIVTLDXVMLLQKVSDXMKNLILIILKKNVFEHIVQSIDFYHNFVIXIIVMKNNLENEDFFKSVECNLTFLRSDKKYIFSDEMSEQDSYSTIVINESSIKVRKI |
| Ga0272420_100048659 | F048018 | GAG | MIXRHSLSELSTYFLSXKYKXFSYSSHLIKEILLXCCASLQSALIIXAANLSLISIYFHNVXVKVSVKSSLRFRVFXSSXNLTSSTSNSLNSRFMKVKICKDAEIIENRCNXTEFRVMICDXSFMILMLRTSRARFSTILRSKTXIFKIIXCXYXCXELNVFFFLERSSERRVKAFNLLLILLRX |
| Ga0272420_100048666 | F040408 | N/A | MYDYESIFDICIENDAMKEEVSAAKEHVEMLQNVQNMLMQXX |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |