Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000489 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000489 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58043
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (22.22%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

58043

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (22.22%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (7.69%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009377	Metagenome	318	Y
F013598	Metagenome	269	Y
F021026	Metagenome	220	Y
F021216	Metagenome	219	Y
F023763	Metagenome	208	Y
F025887	Metagenome	199	Y
F038009	Metagenome	166	Y
F041516	Metagenome	159	Y
F048018	Metagenome	148	Y
F080690	Metagenome	114	Y
F086377	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100048911	F080690	N/A	MKLSYNLSIDDEHVIKQFAQSMIENSVEIFRVMQELQNQVRQHDVIILFSFIVLSSSVYIKLNSQSLAMIAQIIAQILNNQSFFIVHLFTNSIAVFITSKFEKLFDISEYERNKDQLNAXEQSLIQRMNVNDDHYFSHRVKILYVESRLIIDKKIHNLMSQYXVNDLCIIFIFADXXHKLHHCCDNSFKTKDAHLYLREILKQDTNSFADYYNLFFQKKEYFLMKDFSLIDCLKCNVNYFTQVIIFFXRNLDETXSFIFHQXIQAFSDINEELQQLKHH
Ga0272420_100048912	F001951	N/A	MTKLRFIDSLKDEKERDEDTVKTTVTEMMIFELKELLVDAKMLLILMNEMMMKTKQD
Ga0272420_100048913	F021026	N/A	MQQHHLFLYQLTHSRRLQEFDDQVALIDDIIHVVEITMILDKHIKRLFFYVTELNQYLIVMNLSXLRHHVIDVNFKHNILILSFFFYLNHCCSSFIKIYDLNQQEENFSFEFNKVAFSQSRSQFIHKKQLSSXITHKK
Ga0272420_100048914	F038009	N/A	MSSMIKASSFQLNYVKLYRRLIELICLKDNRSSKEERISTLDFXXVFFLNDLKNMTKSFLFQMKDKIERDLFLVNELSINXLFVNERKVILLFVSRRKTELLLSSEXETRLLLASELKTELLLSSEXETRLLLISKLNAELLLVSNL
Ga0272420_100048916	F086377	N/A	MIQRFXDQRQRISILDCDNVQISIVYAEAKFFFEFLDEENKDDRLKTTDLNEIFAQIFIQIMTKF
Ga0272420_100048918	F023763	N/A	MLILMSRVECISLFKEIFXATCQSIQLIINLVKMISNVIVKSKQKLTSMSLMMTQLLNXHEILKIFVIHNHLDRIDKVFKLXSLFLESANSDHEFFIINLVVTLNXIMLLRKVSDXMKNLILIILRKNVFEYIVXSIDFYHNLVI
Ga0272420_100048919	F048018	N/A	MILSXMSXMIRRCSLFELSTYFLSXKYRXFSCSLHSTREILLXCHASLQSVSIIXAANLSLISTYFHNVXVKVSAESSSRFKVSXSSXNLIFSTLNYLIFRFMKVKICKNAEIIENRCNXTEFKAMICDXSFITLMLKRLKMRFSTILRSKT
Ga0272420_100048926	F021216	N/A	MKSRMKSNAMRKEHHELEKALRNHERSKNNHSNDTFNEHTESISSCDIIKESDEKEKK
Ga0272420_100048931	F041516	N/A	MTQKVIHIHEAYNSSFRNHEIIHEKENLSDIKKTLHMLRENILVKDFNLHHFTXEELFYS
Ga0272420_100048937	F009377	AGAAG	MNASLNTEEENMNALLFDHEVIKISISTELNAXISTHEADDIVAFIKYICQQHDTEIETYNDMIQMLEDVNETNIMLKITQTHLRKENKDKNVIIRHLEAASSQQSTLISEDXFSKLIKLLNSLLFEDSSQNVDNXLSRMRNKLKINKNHFSIEELKIAYIKSXVSEAAVKHIASCMQDIFLNSFLEVEEVLSIINKMYDDLNHHHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNDTLLNDLQHKISSNLQQVTLNERITNLNEFVDICMQVDVRLTELNAQSVVKASAT
Ga0272420_100048950	F025887	N/A	MSDDLFDFKSFTVDVILSSLEKIFRFLALIDTEVIDMTFIDESLMSELCKRFDIQSISLSKSKLIQLYDEIFD
Ga0272420_100048951	F009377	N/A	MIRSTESESVSIAHYELXNARKESLLSQNXTASEEEDMNASLNTEEENMNVLLFDHEMIKISISTELNAXISAYEADDLIIFIKYICQQHDIEIKIYNDMIQMLNDVNKINIELKAINIELKATQITLNAVXTRLQKEMKKKNMIIRHLEATSSRLSTLISKDQFSRSIKLSDSSLFKDSRQNVNNXLFXMRNKLKMNKNHFSIEEMKIAYVKSQVSKTTIKHIALRMRNMIMNSFLEAGKILSIINKMYDDLNXHHMIQRQFLKLY
Ga0272420_10004899	F013598	N/A	MNFIINLFDSSEYTIILMIICKLLKERHYISCITNDEDITVEKTAEMLIQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000489

Overview

Ecosystem & Geography

Associated Families

Sequences