Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000557 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000557 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52724
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (17.91%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

52724

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (17.91%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008668	Metagenome	329	Y
F019260	Metagenome	230	Y
F048017	Metagenome	148	Y
F074203	Metagenome	119	Y
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y
F087978	Metagenome	109	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100055713	F002432	N/A	MSFDSDTTDYKTTHEHLEVRKVDDIVIQMKELLNFNHQQLKKMKLIIEVQINKHRRDITYEVNDXIXLSFRNIKTTRLCKDLKDKQLNLYQITVKVSIFYHLYLSISMKHLHLMFSLKLLQLYSENFLSEQHSESLRLIIIKNNEYXEINDILNFRCYRDRIQYKVKXTDLDRNDEXYYVDKEKFDNSEKVLNEFHKLYSNKSR
Ga0272420_100055742	F074203	N/A	MSSHSSTEERFEEFRNRFFQIFDADSSKSSSAASFIQKDDELFAEMIILFVFYKIXKAQSLALDEETDXLYKLNKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSIXKNXYEKIQNKLEINVNLFSNERVKLSYIHSRLFDDAAEITQARCERDCVNLYRIVDDLLKELAQLFDDSNKKVNFRRKYYNLVQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLXFIXVDQLVQSDSLKQIRFYLIHLNNDQRVIREIKEQDQTRQXSF
Ga0272420_100055744	F048017	N/A	MKNKQLSRXQVNYLNILSKFNFQIIFRSDKMNIKVDALIRMLLVNVSESAQRLEDHFQTILTLDRVDVLFIESKANLYQRVRMINQTDELCSEYRQAMNENKLKFHITKLKNCEIIDDVLFRKDLLXVSENMHTKLLQEVHD
Ga0272420_100055749	F076668	N/A	MTCLLLTSLFLACALACKTSKSSMHSTDHYAIKETSVFKSTTTTKKIMHMSNALSTDILMLCNRKDATNQTLLRCAKFENIRRSQKISFSKXSSKDXLERLCMIMLERTCYNMIFTFSALSXVLFKKSLKTLCTSLXKVSALLFRIITLVVEFSLTFCSMQTSTXQQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSVR
Ga0272420_100055752	F086375	N/A	MFILFVNSKSIASQNRGENXFNEIKEHYKRQNNDRVVIFKXLHKLRQFNVXKEVNEIDKAAMKDNVRDEIEQERKNKNIHDNASQ
Ga0272420_100055756	F008668	N/A	MSFDSDTTDYKTIHERLEARKGDDIVIXMKELLNFDHQQLKKTKLIIKV
Ga0272420_100055757	F087978	N/A	MFSSKLLQSYLEDLLSEQYSESLRSITIKNNEHXKIDDILNFRCYRDQIQYKVKXTDLDKDDEXYYVDKEKFNDSEKVLNEFHKLSLNKSR
Ga0272420_100055761	F019260	N/A	MIQELKSMSRINIKSEKYLNSELYIEEXENKLNQFIFELISKLKLNTDHYSTFEFRLLYEYSRLSRNAVAQALSHMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNCIFIKYLFNFQQHIDAIKYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYFVKYATFSTDSKATISSSRNFMNLSIVNMKKRDSLTLEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLRVISLFVFAISIDNLAFDTSLALRKV
Ga0272420_10005579	F074203	N/A	MSSCSSTEEHFEEFQNHFSQISDADSLKSRTKSLSAASFIHENDESFAKTIISFVFYEIXKTXSLALNEETDRLYELDKQQEDEIKELKTRLQAKENTSSDLIYSERSRFQKIPDSSLFTNEKNSTXKNXYRKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARCERDCVNLYRIVDDLLKELAQLFNDSNKKVNFRRKYYNLIQRFKKFNEFYTQF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000557

Overview

Ecosystem & Geography

Associated Families

Sequences