NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000580

Scaffold Ga0272420_1000580


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000580 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50987
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (17.54%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F021026Metagenome220Y
F044227Metagenome154Y
F058565Metagenome134Y
F076668Metagenome117Y
F096306Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100058023F096306N/ALSNLCDIRVMFAMYDNYAVDSLIVDNDSNEEKSCKDNSELQASMILFNITILIATNVKIVFVESNDK
Ga0272420_100058024F008735N/AMKEITIIIHVHVLYQTLLSCIQLIFVLLIFRYVKKLLKFKSDEDSDRICKKMNDKRRLIVQDLCDDLSYHHKKLRIQLYIDXRTENNEXEXNDDIMLLNLILKLMHYVKDLDXIFNHTLNELFNSTLIIDQEIIRXLHLSERIIKXDFNIXKRCRKCRSFIMSKTELD
Ga0272420_100058026F021026N/AMNKFFTQQHHFLLHQLTHSCRLQGFDDQVTLINDITHVVEITMILDEHIERLFFYVIELSQYFIVINLSXLCYHVIDVNFEHNILILSFFFCLNHCCSSFVKIYDFNQQEENFSFEVNKVTFFQSRSQFTYKKQLSSQITHKKQFSLQIAHKKQFSTQFACKK
Ga0272420_100058039F058565N/AMNCMNCSNADLKTIASNVDSSQENKDVRLKHSHNDEENITNIIDLLIKISTLKKEKSKDHSXKEIALKLIQCL
Ga0272420_100058048F044227N/AMXLQIKSSDDEACIHALLELIAFAIKNVTRCXLLELLNNHHHHEESQSSSEDDDENEAFKAI
Ga0272420_100058057F076668N/AMTCLLLTSSFLACASACKTFKSSMHSTDHYVIKETSIFKSTTIIEKIMHISNVLFTDILMLCNRKDATNQTLLRCAKFENIRRLQKISFSKXSSKDXLERLCMIMLKRTCYNIIFAFSVLSXMLFKKSLKTLCASLXKVSALLFHIITLVVEFSLTFCSMQ
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