NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000600

Scaffold Ga0272420_1000600


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000600 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49707
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (26.92%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F004755Metagenome424Y
F008668Metagenome329Y
F009580Metagenome315Y
F028368Metagenome191Y
F048018Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100060023F028368GAGLCKLDEILSKENYFEKSFLIDTHLISQNQSFSLRFLIDSDSVIYTIIHSNLVNKVCKKLKIQSISLIKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMRNDIIVFSNQLNTSISIFLISFNSKHSSXSRSTSSFSITQTKIFMMLKXFIRKESFLIQSINAALFKTLLNHSKKNKIKVFALFMMNINREITYNTQCDLNALNVSSINETT
Ga0272420_100060024F004755GAGLSYIHSRLFNDAAEIIQARRERDCVNLYKIIKDILKELAQLFDDSNKKVNFRREYYNLIQEFKKFNEFYTQFQHLSFYLDYYEKQLITDLKDKIHLHLXFIXVDQLVQSNSLKEIRFYLIHLNNDQRVIREIKNKIKRVDDFSKTIFHKVTIVTQSVDHLKSDQLKSRDAILTSVKEANILVESCFICHKSDHSFKECFNRSTRINAVNNEYDRFDFDSNFDSKN
Ga0272420_10006003F028368N/ALKENYFEKSFLIDAYLISQNXSFSLHSLIDSDSVIYMIIHFNLVDKVCKKLKIQSILLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLIISMLIADIDHHEVILSKLXMNKNEILLNMXNNIIVFSNQLNTSISIFSILFNSKHLNXSXSTSSSSITKIKIFMMLKXFIREELFLIXSIDAASFKTLLNCLKKNKIKVFALFMMNINRKITYNTQCDLNALNVFSINEMTQNLKDIKAKLSSKYHEFLNVFD
Ga0272420_100060031F001951N/AMTMTKFKFIDSLRNKREKDEDTVKTTVTEMMIFELKELLVNAKMFLTLMNETMMKMK
Ga0272420_100060032F009580AGCAGMIEVRMKRLKLVDKMIYIQISERDLTQKLNYSCKQQNFFIYTDDVIVVNVHDMQSEELFIXAFFNNFAXMLQLAVVAHLSLVADFLDFRNDQNLILNDDNDKV
Ga0272420_100060035F048018GAGMIXRHSLFELSTYFLSXKYKXFSCSLHSTKEILLXCHASLXSASIIXAANLSLISTCFYNVXVKMSAESSSRFRMSXFSXNLIFLTLNSLISKFMKIKIYKDAEIIKNRCNXTESKVMICDXSFMTLMLKMLKMRFSTILKSKTXIFRIVXCXYXCQELNVFFSLKKFSEQCVKAFNLSSILLKX
Ga0272420_10006006F008668N/AMIFFYFNKEFHSQISFNSNTTDYETTCERLEARKADDIVIQMKELLDFNHQQLKKTKLIIEIQINKHKXDVIYEVNDXV
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