NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1000633

Scaffold Ga0272420_1000633


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000633 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47361
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (11.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F021216Metagenome219Y
F038008Metagenome166Y
F096306Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10006331F000597N/AMKDVLISSTTSMSNDSFASESLTTEYVLSSNEISYSLKSLIDIEAADYSFIDKVIAQIVCNQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITXLNQHQMI
Ga0272420_10006332F003820GAGLIAKSAKICLCHSLQIADVMKLFSYLEYDDHILMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNSNQRVNYQLRSERCTVIVKVTVVPDKRATSLSVTTLIINYVKLTISSISESARSSIICYICKIIDHLFKNCSQLNKIDTSASHAFILCLHEIIISKNKENEKMSFENNETKN
Ga0272420_10006333F096306N/ALNTLSSLCDIRAMFAMYDNRAVNSLIVDDNSNEERSCRDNSELYTSMILFDIATLIATNVKIVFVESNDK
Ga0272420_100063349F038008N/AMKMKQSHFYIITFXSKSSKVVIVANKKMSINQHHLDTFASKQRVYLNDNNSKKDVTMIAMRINXKLNKRLRELTLIITHHEELKELIMKMKHLADVAIKNRKYHEKIYKVYNDNQTSLKTVKAIISTKDQTCLQXVQIAHESIQF
Ga0272420_100063353F021216N/AMKSRMKSNAIRRKHHELEKVLRNHECSNDDHLNDTLNEHTESISSCDIIEKSDEREKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.