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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000643 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46815 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (33.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028667 | Metagenome | 190 | Y |
| F038484 | Metagenome | 165 | Y |
| F044227 | Metagenome | 154 | Y |
| F051591 | Metagenome | 143 | Y |
| F089603 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100064313 | F051591 | N/A | MLDAIALYLVYRSSRVISLRIVTTDLDLLPCAPRKGKTDSDLIRNAVLLXNNVVLCATFGRKRVRFRFLCQYAVFCAVLKSIDDLFSSCEFALRFINQITVXIDDSFFCVDELSFRRRFWPAWARKILIFDFXLATQSSLKLLSRIGACFDRTIVLYNLPIDLVYHMLQ |
| Ga0272420_100064325 | F038484 | N/A | MLSLVEIVKKRKRRLHLDCIFALCXMKTFRSTIFLMTSKREMTRLTLVKRARISSHACLISCVRSLTRLCSVILFCSMFRXTCSELVYVSVSRVSMLTLLNASATXCRVXFXSVSSLRSLLDSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASYVKTSRXLSVSILVTXFVSICRRCASHRSFMFSFISRTRTSDFNLITEFSIYMLIIMSNLLDFLMKCVSSYFSDANVASXVRAHFAQTSCALLSVLQISSVNLL |
| Ga0272420_100064326 | F044227 | N/A | MKSSNDEAYTHALLELIASAIKNATRCXLLELLNNHRHHEESQSSSEDDDENEALEAI |
| Ga0272420_100064332 | F089603 | AGG | MINTHYRKLERIIKKAKNIVMYTDASQIQKKIAEVKTEIETTVIFTHELVKCSKATSVSDKIIITKAKLQAINDAIVMCSEKALKNSEI |
| Ga0272420_10006436 | F028667 | GAG | MLIELRNQXDMTLKLNEQXINLQVDHIKKLDELKINQTTINTQEETIIELQEKVLSLKKKQRSANHLRSQQSTKSQTSIENHTXRKSFTLFNNDHHKFFKFSNSFIFTDKNELTXDSXRVKIDNKLQTNVDYFNNENICIVYVIFRLEDDAAEHIFAXRXHNALHSYISINKLFKHLKEIYNKLNKNQKCRRKYNALRQADKSFNIFYFNFMKLFSYLEYDDCTLMNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNSKQRVKYQFRSERCTVIIKVTVVSNKRVTFLSVTTSIINYVKSTISSTSESARSSIICYICKTLNHLFKNCSQLNKINTSASHAFILKNKENEKISFKNSEAKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |