NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000648

Scaffold Ga0272420_1000648


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000648 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46570
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.36%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F002432Metagenome559Y
F008735Metagenome328Y
F021026Metagenome220Y
F023763Metagenome208Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10006482F023763N/AMSLITTQLLNXHEILKIFVIYDHFNRINKVFKLXSSFLESANNDHTFFIVDFIVILNXIMLFRKVSDXMKNLIFIILRKNVFKHIVQSINFYHNLVIXIIVMKNNLESENFLKNVECNLTFLKSDKEYIFFDEMSERDNYFTIFINKSFIKVREI
Ga0272420_10006483F038009GGAMIKALSFQLNYVKMYRRLIELICLRNNRSSKEERILTLDFXXVFLLNDLKNMTKSFLFQTRNKTEXDLFLVNELNISLLLVSEXRVILLLASRXETKLLLTSKLRTELLLVSELKTELLLSSELRTKLLFASKLNAELLLVNNL
Ga0272420_10006484F021026N/AMIVFCILRQAQSKVLTFALIDSEVSTYVFMNKFFAQQHHLLLHQLTHSRRLXEFDDQVTLIDDIIHVVEITMILDKHIKRLFFYVIELSQYLIIMNLSXLCHHVINVNFEHNILILSFFFCLDHCCQSLIKIYDLNQQEENFLLEVNKVTSLQSCFQFTYKKQLSL
Ga0272420_100064841F002432N/AMQDDXIKXIFMMKFSDNSNIFSITSMISFYFNKRFHSXMSFDSDTTDYKTTCEHLEVKKVNNIIIQMKELLNFNHQQLKKMKLIIEVQINKHRXDITYEVNDXVXLSFRNVKTTRLCKDLKDKQLNFYQITVKVSIFYHLHLSISIKHLHLMFSSKLLQSYSEDLLSEQHLKSFRSITIKDDEHXKINDMLNFRCYQDQIQYKVK
Ga0272420_10006485F001951N/AMMIITKLRFIDSSRNEREKNEDTVEITVTKVMIFELKELLIDAEMFLTLTNEMMMKIK
Ga0272420_10006487F008735N/AMKEVMIIVHVHTLYQTLLFCIQLIFVSFIFRYVEKLLEFKSDKDSDRVCKEMNDKRRLIVQDLCDNLSYHHKKLRIQLYINXRTENDEXNDNIMLSNLILKLLHCIKDLDXIFNHTLSELFNSMLIIDQEIVRXLHLSERITRRDFNIXKRCRKCKSFVMSKTELD
Ga0272420_10006489F002432N/AMKFSENFNIFSIISMISFYFNKSFHFXMSFNLNTTNYETIRERIEARKVNDIIMQMKELLSFDCQQLKKMKQIIEAQINKHRXNVIYEVNDXVXLFFKNIKTTRSCKDLKDKQLELYQIIVKAEIFYHLHLSISMKHLHLMFSLKLLRFYSDDSLSKQQSESFRLIIIKDNTY
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