NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000688

Scaffold Ga0272420_1000688


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000688 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45274
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (23.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F004755Metagenome424Y
F033265Metagenome177Y
F042102Metagenome158Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100068814F000597N/AMSMSDDSFASESLTIEYILSSNEINYSLKSLIDTEAADYSFIDEVIAQIVYDQLQIEFRTLIKAKSIQEFNDHYAKKLITHVIYLNSMIQDHTIDIAFMLITQLKQHQMILEKTXMNKINLVINM
Ga0272420_100068826F004755GAGLFNDLNKKVNFRREYYNLIQRFKKFNEFYTQFQRLSFYLDYHKKQLIVDLKDKIHSRLQFIXVNQLVQSDSLKEIRFYLIYLNNDQRVIXKIKNKIKRVNDFSKTIFHRATVITQSVDHSKSDQLKSRDAILTSVKEANILVESCFICHKSDHSSKECFDQSTRINAVNNEYDRFDFDSNFDSKN
Ga0272420_100068828F033265N/AMMTSQLKKRFESCYETSINCMIYSVLLFXTEILNSYXLYEKVFANDXESQLVYLQSIILRSTINQNKSIKTLNANLEFTAITCRTTESNKYLXXNLATISISSQSLQXFSSTLIKNFTLEXVLIQIXLTIKQLVNDLKLEKQMILSFEXKSYXTSIINNXKRXSXSSKFRSININETSSIKQMTEFDYLSEMSRQRDSAKIXKTNS
Ga0272420_10006883F102179N/AMSVHNVNENINTCSAMHVRSMLLKVIILAVQETHLNEVHFLRNKILQFEFENLKKHDDETLIHKNHNIIKKQLNFVAKTVDCKQLILHAIIKVLIIHEMIYNFNSKFIVKLIKILQQENEFTVKLKADEMMNI
Ga0272420_100068838F042102N/AMTRSTESESVSIAHYDFQNVRRESLLSQNRAASEEEDTNASLNTEKENTNALLFDHEMIKISINTELNAXINAHEANDIVIFIKYICQQHDIEIKIHNDMIQMLEDVNEINITLKITQTHLQKENKDKNVIIHHLKVASSRQSTSISEDYFSKLIKLLNSSLFEDSTQNVDNXLSXMXNKLKTNKNHFSIEELKITYIESXVSEAAIKHIASCMQNTFLNSFLEVEEVLSMINKMYDDLNHHHTTQQQYLKLYQNKIFFHEIXMKFQRFSAELEYNNETLLNDFQHKISSNLQRATLNEXIIDLNEFINICMQVNVRLTELNARSVVKASTTQAARSVSSTLTARLTSSVSSXKKLRRLNLNSIQKELFKKELCFKCKKLEHRAYNCFETTQVHEIATNLKNDLLSSK
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