Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1000702 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1000702 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44270
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (21.28%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

44270

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (21.28%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F009580	Metagenome	315	Y
F023763	Metagenome	208	Y
F038009	Metagenome	166	Y
F038484	Metagenome	165	Y
F044227	Metagenome	154	Y
F048018	Metagenome	148	Y
F070710	Metagenome	122	Y
F100079	Metagenome	102	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100070216	F002432	GAG	MMKFSDNSNIFSISSMISFYFNKRFHSRISFNLNTTDYETTCERLEARKVDDIVIXMKELLNFDRQQLKKTKLIIEVQINKHRXNVTYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQLYSKDLLSKQHSESLKSITIEDDEHXEIDDILNFRRYRDRIQYKVKXIDLDRNDEXYYVDKGKFDDLEEVLNEFHKLYSNKSR
Ga0272420_10007022	F009580	N/A	MIEVRMKRLKLVDKMICIQISERDLAQKLNFSYEQXDFFIYIDDIIVVNVHDIQSEEFLIXAFFSDFAQMLQFAIVTKLSLVANFLDFRNNQSFILNDDNDKV
Ga0272420_10007023	F038009	GAG	MIKASSSQLNYVKLYKRLIELICLKDNRSFRKKRILTLDFXXVFFLNDLKNTTRSFLFQTRDKIEQDSFLINELSINXLLMSEREVILLLVSRXKTELLLASKLRTELLLVSKLKTELLLSSEXKTKLLLASKLSAELLLVNNL
Ga0272420_100070230	F023763	GAG	MNFQNCLILILMLRIKCIFLFKKIFXTTCQNIQLIIDLVEMISIVIVESKQKLTSMSLTTTQLLNXHEILKIFMICDHLNKINKVFKLXSSFLESANNDHKFFIIDFVVTLDXIMLLQKVSDXMKNFILIVLKENVFKHIVQSIDFYHNLVIXIIMTKNILESEDFLKNVECNLTFLKLNKEYIFSDETSERSSYFTIVINESFIEVREI
Ga0272420_100070231	F048018	N/A	MSXMIXRRSLSELSTYFLSXKYRXFSCSSHLTKEILLXCCASLQSTSIIXTANLSLISIYFHNVXMKVSAKSSSRFRMFXFSXDLTSSTLNSSISKFIKAKICKSAEIIKNKCNXIESKVMICVXSFMILMSKMSRAKFLTILRFKTXIFKIV
Ga0272420_100070237	F070710	N/A	MIKQSFLQILQYNIRKSLRIQKSFLINREIREFDIVAIQKQDHNNNDSQSFSSAYNFFHLVKNSSSQSRTCIYINKYLRFNQXIVETAKSNICSIRILTRNADNKTQTLRLLNVYNSCSLFITFTKKSSIISRLNELLKNDCKQLIIKDFNLHHSH
Ga0272420_100070240	F038484	N/A	MRSILMCITKVLFAFXRSSRIFVVLLLRCNLCAEITLMFATHSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVHRLHLDCIFASSXMKIFRSIIFLMTSKREMTRLTLVKRAHISLHACLIFCIQSLTQLCSVILFCSMFKXTCNKRMYVSVFKVLMLTLLNASATXCRVXFXSVSSLHFLLNSSSFLSRXCQIDASNVISDLTTAEYTCLAFVKIASHVKISRXLSVSILVTXFISICRRCTSHHSFMFSCIFRIRTSDFDLITEFSIYMLVIMLNLFDFLVKCVSSYFSDANITSXVQTHFAQTSCALLSVLQISSVNLL
Ga0272420_100070242	F100079	N/A	MFKHRHSICKXYADEKTLLKEEKHKQISKEXLNYVVXLKV
Ga0272420_10007029	F044227	N/A	MRLRMKSSDDEACTYALLELIAPAIKNDTRCXLLELSNNHHHHEESQNSSEDDDENEALEAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1000702

Overview

Ecosystem & Geography

Associated Families

Sequences