 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000763 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42121 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (15.91%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004755 | Metagenome | 424 | Y |
| F008735 | Metagenome | 328 | Y |
| F033265 | Metagenome | 177 | Y |
| F033266 | Metagenome | 177 | Y |
| F057012 | Metagenome | 136 | Y |
| F061402 | Metagenome | 131 | Y |
| F079402 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100076312 | F061402 | N/A | MQDDXFTXLFMTEFVDNNAISSSIEQSAFFLNKSFHSHMSFDLNSTEYEITXARIQASKAENIFKHMK |
| Ga0272420_100076314 | F033265 | N/A | MSFAQSYVISSKNVTMFSVIEKMMTSQSKKRFESCYETSIDCMIYSVLLFXTKTLNSYQLCEKVFASDXESQLVYSQFIILRLMINXNESIKTLNTNLEFTAITCRMIELNEYLCXNSATISISSRSLQXFSSTSIKNFTLEXVLIQI |
| Ga0272420_100076318 | F004755 | GAG | LSYIHFRLFDDAAEIIQARCERDYVNLYRIVDDLLKELAQLFNDSKKKVNFRREYYNLIQEFKKFNEFYTQFQRLSFYLDYHKKQLIADLKDKIHSRLXFIXINQLVQSDSLKEIRFYLIHLNNNQQVIRKIKNKIKCVNNFSKTIFHRTIVITQSVDHLKSDQLKSRDAILTSVKEADILVESCFICHKFNHSFKKCLNQSTRINAVNNEYDRFDFDSNFDSKN |
| Ga0272420_100076319 | F033266 | N/A | MFSHSLTEERFEEFQNRFSQIFDADSLKSRTKSSSAASFIHEDDELFVETIIFLVFYEIXKAXSLALDEETDXLYELNKQQEDEIKELKTRLQAKEITSSDFIYSERSRSQKVLILRCLLMKRILLERTNTEKFRIN |
| Ga0272420_100076332 | F008735 | N/A | VSFLIYDESXLNIDDLDLMKEIMIIFHVHALYQTLLSCIQSIFVSFIFKYVEKLLESRSDEDSDRVCKEINDEKRLIVQDLCNDLSYHCKKLRIQFYINXRIKNDEXRXSDNIMLLNLILKLLHYAKDLNXIFDHTLSELFSSTLIVDQEIVKXLLXACSAFYXDVRSXSEPRLYQV |
| Ga0272420_10007636 | F079402 | N/A | MXNKLKMNKNYFSIEEMKIAYVKSRVSETTIKHIALRMRNTITNSFLEAEEILSIINKMYNDLN |
| Ga0272420_10007638 | F057012 | AGAAG | MXLSXVSSDARNRSEFEKRSVLVKVVTENDILIFCFINMSDDSFDFKSFTVDVILNSLEKIFKSFALINTEVTDMTFIDESLMSELCECFDIQSISLSKSKSIXSYDEISDRKSITHALYTSIMIQEHKNKIMLLLITRLDQHKIIIENLXLKRNQILIDFANDXLISSLKIXTLKPVVLKASSQSAFHRSKFSKICKMKRKNLN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |