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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000791 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41301 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (12.50%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021216 | Metagenome | 219 | Y |
| F038008 | Metagenome | 166 | Y |
| F040408 | Metagenome | 161 | Y |
| F057012 | Metagenome | 136 | Y |
| F064254 | Metagenome | 128 | Y |
| F065269 | Metagenome | 127 | Y |
| F098340 | Metagenome | 103 | Y |
| F104135 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100079110 | F057012 | N/A | MLDDSFDFKSFIVNIILSSLEKIFRSLALIDIKVTDMTFINDSLISELYECFDIQSISLFKSKSIHSYDEIFDXRFITHALYISVIIQEYKNEMMSLLITRLDQHKIIINNLXLKRNQILIDSTNNRLISSSNIQILKLIVXKTSSQSAFHXLESSEICEMKRKNLKFMSMIILRRTTNLKSVNRFIKSAFIRKQST |
| Ga0272420_100079112 | F065269 | N/A | MTRSTESESVSITHYELQNARIESLLLQNRTASEEEDTNVSLNTEEENMNVLLFNHKMIKISISTELNA |
| Ga0272420_100079118 | F040408 | N/A | MYNYELIFNIYIKNDAMKEEMSAAKEHVEMLQDMQNTLM |
| Ga0272420_100079122 | F104135 | N/A | MFAAHLSTLKHQLSLYNDEHKXTHLFIKLRFELHVIITNVQLISIIXNALINLVTXLKTNLRKEHILLLKXSXDENLHNQDKINKKTYLKRKKSHXLTKLDSSSKTSSHASSYYSKNLFNITCYMCNXKNHYSIDCKDEKIKNRSKESDANRVFINLISYMSRFKISRKDKLSINASNHREKNKKFSL |
| Ga0272420_100079125 | F021216 | N/A | MKSRMKSNAIKREHHELKKVLRNHERSNDDHLNNTLNEHTELISSCDVIKESNERERK |
| Ga0272420_100079126 | F038008 | N/A | MKMKXSHLYMMIFXSKSLRVVIVVNKKMSISQHCFNTFTLKQRIYLNDSDSKKNVMMTAMKINXKLNKRLRKSTLVITHHEELKELIARMKHLADVMTKNXEYHEKIYKVYNDNQTSLKTIKVMISTKNQTRLQXVQIMHESIQS |
| Ga0272420_100079144 | F064254 | N/A | MQELYKSVSSLFSFSFSFIXFFNDITAXNXFNMLIESIIXMIIIAALMISKSFLKFVMFSSHCIAFHSTFHLRYVNKMCLINIQSLLHLHVIIVTSSTRFSCRNXLKSIFLMRSCINNALXDFAXLLCNHKYXCVISDVRYQKXVALNLFFQTILHVYLICFCMSISFVITSMHXCSVSNKDKSCASLIILFTTLFSSISAYFVTQCNFSMTSXN |
| Ga0272420_10007919 | F098340 | N/A | MIKVAAYQTLVKKKNVKIFTLIISEINKMLSLIKDSAKLNEMTFVMSLKKLKKKLSIVYRDFLNVFDREKTT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |