NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000798

Scaffold Ga0272420_1000798


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000798 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41101
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (27.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001951Metagenome612Y
F021026Metagenome220Y
F075493Metagenome118Y
F075494Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100079816F075494N/AMSQDEFYCTXVINEVKKMFVYNVNENMNTCSAMHVRSMLLRIIILAVXKTHLNEVHFSRDKIFQLKSITLKRINVKILTYKDCNVVKKQLNSVVETVDCKQLILHAIIRVLTIYEMIYNFNSKFIVELIKILQQEDKFTVKLKANEMMNIXKNDIKA
Ga0272420_100079821F001951N/AMIIMKLKFINLLRNKRERNEDTVKTTVTEMMIFELKEFLINAEMLLTLMNKMMMKTE
Ga0272420_100079823F021026N/AMNKFFTQQHHFFLHQLIHSCRLQEFDDQVTLINDIIYVVEITIILDEHIEKLFFYVIELDQYFIIMTLSXLYHHIIDVNFEHNSLILSFFFCLNHCCQFLIKIYDFNLQEENFLLKVNKVAFIQSRSQFAYKKQLSSXIIHKKQFSLQIVYKKQFSIQFTCKK
Ga0272420_100079831F000597AGAAGMTDDSFTSESLTIECILSSNEISYSLKLLIDIEAADYSFINEVIMQIIYDQLQIESLTLIKAKSIQEFDDYYAKKLITHVIYSNLMIQDYTVNIAFMLITQLKQHQMILEKTXMNKINLVINM
Ga0272420_100079839F075493N/AMRSVQAVHEYMLRRLMTLFAVASQAIHVXNISRVQISIQIYAFDFDVHCKNAFCFLKIITHLYHLVAQMQSLCXNCVNICDTFSVLFSSLISLIFVILRYCDVITCXNHCEKENVSSASQLYLRIFLNEDIQKYYFLDDE
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