NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000901

Scaffold Ga0272420_1000901


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000901 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37961
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (48.28%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F004755Metagenome424Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100090123F002432N/AMKFSDNSNIFSISSIISFYFNKRFHSRISFDSDSTDYETTRERLESRKVDDIVIQMKELLNFDYQQLKKTKLIIEVQINKHRQDVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLRLSVSMKHLHSMFSSKLLQSYSEDSLSEQHSESLRSITIKDDEHXKIDNILNFKRYQGRIQYKVKXTDLDRNDEXYYVDKEKFNDSEEVLNEFHKLYSNKPR
Ga0272420_100090125F004755AGAAGLKDKIHSRLXFVXVDQLVQSDSLKKIRFYLIHLNNDQRVIREIKNKIKRVNDLSKTIFHRLTVVTQSVNHAKSDQLKSRDAILTNVKKADILVKSCFICHKSDHSSKECLDRSTRINAVNNEYDRFDFDSNFDSKN
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