NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000974

Scaffold Ga0272420_1000974


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000974 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35541
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F057012Metagenome136Y
F065269Metagenome127Y
F096306Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10009741F065269N/ALNLDQQFSTHTIIKSTESESVSIARYELQNVRRESLLSQNQTASEEEDTNASLNTEEKNMNVLLFNHEMIKISINTELNA
Ga0272420_10009742F057012GAGMLIFCFINMLYDSFDFKSFIVNVILSSLEKIFRFLALINIKVTDMTFINNSLISELCERFDIQSISLFKSKLIHSYDKTLDXRFITHALYISVTIQEHKNEMMSLLITHLDQHKIIIDNFXLKRNQILINSANDXLISSSNIQISKLIVLKTSSQSAFYQFKSSEICKIKRKNMKSMSMIILKRTTNSKSVNQFIESALIRKQST
Ga0272420_100097424F096306N/AMFAMYDNRAVDSLIVDDDSNEERSCKDNSELQASMILFNIATLIATNVKIVFVELNDK
Ga0272420_10009748F021216N/AMRREHHKLEKALRNRERNDDDYSNNTFNEHIKSISSCDVIKESDERERK
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Institute for Fundamental Biomedical Research
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