NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001003

Scaffold Ga0272420_1001003


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001003 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34889
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (15.56%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036035Metagenome170Y
F041516Metagenome159Y
F065268Metagenome127Y
F094622Metagenome105Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100100321F065268N/AMTRSSESASIARYKLQNARRESLLLQNXTASEEKNMNASSDTKEMNMNMLLFDHEIIKISISTELNAXISIYEADDLIIFIKYIC
Ga0272420_100100327F102180N/AMRINXELNKRLKESTLVITHHEELKELIAKMKHLTDVVTENQECHEKIYKVYSDSQTSLKTVKVMILTKDQTRLQXVQIAHESI
Ga0272420_100100331F041516N/AMIQKAIHIHEAYNSSLKDHEVIYEKESLSNIEKTLHMLKECVLVKDFNLYHLT
Ga0272420_100100335F036035N/AMKDDAMQREHHELEKASRNYERNDSNHLNNTLNKHTASISDCNVIKKSNEREEE
Ga0272420_100100336F094622N/AMLIRQHNLDTFALKQRVYLNDSNSRDNVTVIMMRMNXELNKRLRELTLVITHHDELKELVARAKHLADVVTANQECHEKIYKIYSDSQIFLKAVKVMISTKDQTRLXXVQTAHENIQS
Ga0272420_10010036F065268N/AMTRSTESESVSIARYELQNARKESLLSQNXTASEEEDTNASLNTEKENMNALLFDHEIIKISISTELNAXISAHEADDLIVFIKYMC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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