NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001034

Scaffold Ga0272420_1001034


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001034 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34107
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F071806Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100103411F055319N/AMIEVRVKRLRLVDKMIYIQISEHDLTQKLNFSCEQRDFFIYIDNIIVVNVYDMQSEELLI
Ga0272420_100103412F001951N/AMMTMTKFRFINSLKDEREKDEDTVETTVTEMMIFELKELLVNAKMLLTLMNEMMMKMKQD
Ga0272420_10010344F071806N/AMKLQSQIITLDSVQLHLFSIISALLQILAFMNLKIEEFNVEDVKSQLDQNILNLDKDFADILTQTL
Ga0272420_10010346F021896N/AMIKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMNERDSYSTIVIDKSFIKVHEI
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