NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001110

Scaffold Ga0272420_1001110


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001110 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32325
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (60.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F061402Metagenome131Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100111010F079402N/AMQNKLKMNKNHFSIEEMKIAYMKSRVSETTIKHIALQMRNTITNSFLEAEEILSIINKMYDDLNQYHTTQRQFLKLYQNKIFFHEF
Ga0272420_10011103F061402N/AMTESVDNNAISSSIEQSAFFLNKSFHSHMSFDLNSTEYEITQARIQASKAENIFKHMK
Ga0272420_10011109F021452GAGMLISCFINMLDDSFDFKSFIVDVILSSLEKIFRFFALINIEITDMTFINDSLISELCERFDIQSISLFKSKLIHSYDETLDQRSIIHALYISVTIQEHKNEMMLLLITRLDQHKIIIDNL
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