NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001206

Scaffold Ga0272420_1001206


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001206 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30560
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F023763Metagenome208Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100120619F038009GAGMIKASSFQLDYVKLYRRSIELICSRNNRSSREKRISTLDFXXVFFLDDLKNTTKSFLFQTRNKIERDLFLVNELSINXLLMSEREVILLLMSRRETELLLSSEXETRLLLASELKTELLLSSEXETRLLLASELSAELLLVSNL
Ga0272420_100120621F009580GAGMICIQISERDLAQKLNFFREQRDFFIYTDDVTVIDIHDMQSEELLIXAFFSDFARMLQLAVVAQLSLVANFLDFKNDQSLILNDDNDKA
Ga0272420_10012063F009580GAGMICIQISERDLAQKLNFFREQRDFFIYTDDVTVIDIHDMQSEELLIXAFFSDFARMLQLAVVAQLSLVADFLDLRNDQNLILNNDNDEA
Ga0272420_10012067F023763N/AMSFQNCLILILMSRIECISLFKKIFXATCQSIQLIIDLVETISDAIVESRQKLTSTSLTTIQLLNXHEILKIFVICDHLNRIDRVFELXSSFLESANNDHEFFIVDLVVTLDXVMLLRKVSDXMKNLVLIILRENVFEHIVVTNXELNEIRMKF
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