NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001242

Scaffold Ga0272420_1001242


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001242 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29829
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (47.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F013598Metagenome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100124229F005901GAGLKEIYDELNKNQKSRREYNALRQADKSFNVFYFDFMKLFNYLDYDDCTLMNDLQNKINNHLQNALSICSKNFTSLLYLRKFLQDVNNKQRVNYQLRSERHTIIIKVIVVSDKRVALLLMMTSIINYVKSTIFSIFESARSSIICYICKISSHLFKNCSQLNKINIFAS
Ga0272420_100124230F000597N/AMSDDFFASESLIIECVLSSNKISYSLKSLIDIEAADYSFIDEVITQIVCDQLQIKLLTLIKAKSIREFNDHYAKKLITHVIYSNLTIQDHTINIASMLIT
Ga0272420_100124236F013598GAGMNFIINLFDSSEYNAILMIICRLSKERHYISCIIDDENITVEKTAEMLIQ

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